DATASET ID: GSE130526 (fin)

Basic information

Tissue / Organ dorsal and anal fin
Experiment type baseline
Sample adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
Source dataset ID GSM3741778
Project ID GSE130526
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Epidermal cells ENSDARG00000077121 (cyp26b1) protein_coding marker DOI:10.1073/pnas.1901021116
    1 Epidermal cells ENSDARG00000093413 (edil3a) protein_coding marker DOI:10.1073/pnas.1901021116
    2 Dermal skeleton ENSDARG00000021442 (cdh11) protein_coding marker DOI:10.1073/pnas.1901021116
    3 Epidermal cells ENSDARG00000070683 (dkk3b) protein_coding marker DOI:10.1073/pnas.1901021116
    4 Xanthophores ENSDARG00000045601 (cax1) protein_coding marker DOI:10.1073/pnas.1901021116
    4 Xanthophores ENSDARG00000071475 (aox5) protein_coding marker DOI:10.1073/pnas.1901021116
    4 Xanthophores ENSDARG00000025912 (bscl2l) protein_coding marker DOI:10.1073/pnas.1901021116
    4 Xanthophores ENSDARG00000075191 (oacyl) protein_coding marker DOI:10.1073/pnas.1901021116
    5 Immune cells ENSDARG00000089043 (ptpn6) protein_coding marker DOI:10.1073/pnas.1901021116
    5 Immune cells ENSDARG00000000767 (spi1b) protein_coding marker DOI:10.1073/pnas.1901021116
    5 Immune cells ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1073/pnas.1901021116
    6 Immune cells ENSDARG00000062152 (chaf1a) protein_coding marker DOI:10.1073/pnas.1901021116
    6 Immune cells ENSDARG00000040041 (mcm4) protein_coding marker DOI:10.1073/pnas.1901021116
    7 Melanophores ENSDARG00000006008 (dct) protein_coding marker DOI:10.1073/pnas.1901021116
    7 Melanophores ENSDARG00000061303 (oca2) protein_coding marker DOI:10.1073/pnas.1901021116
    7 Melanophores ENSDARG00000029204 (tyrp1a) protein_coding marker DOI:10.1073/pnas.1901021116
    8 Dermal skeleton ENSDARG00000002507 (itga10) protein_coding marker DOI:10.1073/pnas.1901021116
    8 Dermal skeleton ENSDARG00000017884 (bgna) protein_coding marker DOI:10.1073/pnas.1901021116

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)