DATASET ID: GSE137784 (HCC, HepABC)

Basic information

Tissue / Organ liver
Experiment type disease
Sample 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
Source dataset ID GSM4087819
Project ID GSE137784
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Hepatocytes -- (ces2) -- marker DOI:10.1242/bio.047829
    2 Hepatocytes ENSDARG00000102456 (cfhl4) protein_coding marker DOI:10.1242/bio.047829
    5 Hepatocytes ENSDARG00000016771 (tfa) protein_coding marker DOI:10.1242/bio.047829
    7 Immune cells ENSDARG00000089362 (grn1) protein_coding marker DOI:10.1242/bio.047829
    7 Immune cells ENSDARG00000095627 (c1qc) protein_coding marker DOI:10.1242/bio.047829
    7 Immune cells ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1242/bio.047829
    7 Immune cells ENSDARG00000000767 (spi1b) protein_coding marker DOI:10.1242/bio.047829
    7 Immune cells ENSDARG00000054610 (coro1a) protein_coding marker DOI:10.1242/bio.047829
    7 Immune cells ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1242/bio.047829
    9 Immune cells ENSDARG00000026350 (wasb) protein_coding marker DOI:10.1242/bio.047829

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)