DATASET ID: GSE122680 (1.5dpf)

Basic information

Tissue / Organ retina
Experiment type baseline
Sample 1.5dpf, WT, untreatment
Source dataset ID GSM3478014
Project ID GSE122680
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Retinal progenitors ENSDARG00000056732 (her4.1) protein_coding marker DOI:10.1242/dev.185660
    2 Retinal progenitors ENSDARG00000014329 (npm1a) protein_coding marker DOI:10.1242/dev.185660
    3 Retinal progenitors ENSDARG00000091150 (mki67) protein_coding marker DOI:10.1242/dev.185660
    3 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660
    4 Muller glia cells ENSDARG00000025301 (gfap) protein_coding marker DOI:10.1242/dev.185660
    5 Bipolar cells ENSDARG00000003469 (neurod4) protein_coding marker DOI:10.1242/dev.185660
    6 Retinal ganglion cells ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1242/dev.185660
    6 Retinal ganglion cells ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.1242/dev.185660
    9 Horizontal cells ENSDARG00000055158 (prox1a) protein_coding marker DOI:10.1242/dev.185660
    10 Muller glia cells ENSDARG00000012504 (rlbp1a) protein_coding marker DOI:10.1242/dev.185660

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)