DATASET ID: PRJNA734348 (shield, control)

Basic information

Tissue / Organ embryo
Experiment type baseline
Sample 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
Source dataset ID SRR14703469
Project ID PRJNA734348
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    2 Ectoderm cells ENSDARG00000101009 (cited4b) protein_coding marker DOI:10.1126/sciadv.abl3858
    2 Ectoderm cells ENSDARG00000056561 (asb11) protein_coding marker DOI:10.1126/sciadv.abl3858
    3 Ventral ENSDARG00000070546 (msgn1) protein_coding marker DOI:10.1126/sciadv.abl3858
    3 Ventral ENSDARG00000019335 (hes6) protein_coding marker DOI:10.1126/sciadv.abl3858
    4 Enveloping layer cells ENSDARG00000036834 (krt92) protein_coding marker DOI:10.1126/sciadv.abl3858

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)