Fish Single-cell RNA Database

GENE ID: ENSDARG00000044490

Symbol	Location	Gene type	Genome version	Species
tlr9	8: 53730368 ~ 53735399 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000044490 (tlr9), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000102460	si:ch73-170d6.4	4: 73155796 ~ 73162005 (-)
ENSDARG00000091614	si:dkey-62k3.6	7: 26567864 ~ 26579465 (-)
ENSDARG00000010756	nod2	7: 37555568 ~ 37563965 (-)
ENSDARG00000093078	plscr3a	5: 24234466 ~ 24238733 (-)
ENSDARG00000091266	si:ch211-71m22.5	2: 8617816 ~ 8636175 (-)
ENSDARG00000079075	si:ch211-71m22.3	2: 8644422 ~ 8648440 (-)
ENSDARG00000101360	si:ch211-215e19.6	2: 51251589 ~ 51259378 (-)
ENSDARG00000099599	pigrl2.3	2: 51493515 ~ 51507540 (-)
ENSDARG00000113188	pigrl3.5	2: 51499900 ~ 51500957 (-)
ENSDARG00000069114	unc93b1	1: 44395976 ~ 44418225 (+)
ENSDARG00000046142	asgrl1	8: 39733278 ~ 39739640 (-)
ENSDARG00000044490	tlr9	8: 53730368 ~ 53735399 (-)
ENSDARG00000033727	il12ba	14: 34951202 ~ 34958756 (+)
ENSDARG00000021572	cgas	13: 27328098 ~ 27332360 (+)
ENSDARG00000074371	tirap	18: 48753162 ~ 48755037 (-)
ENSDARG00000009511	tnfa	19: 27019432 ~ 27024019 (+)
ENSDARG00000013598	tnfb	15: 34699585 ~ 34702661 (+)
ENSDARG00000054968	cd40	23: 37823560 ~ 37835794 (-)
ENSDARG00000078147	il10	11: 21137948 ~ 21139503 (+)
ENSDARG00000053113	ly75	11: 11120532 ~ 11193205 (+)
ENSDARG00000029461	cd209	10: 24971473 ~ 25028527 (-)
ENSDARG00000099175	hmgb1a	10: 36026576 ~ 36032038 (+)
ENSDARG00000098700	il1b	10: 44955106 ~ 44964776 (+)
ENSDARG00000087245	CR847844.1	10: 23537576 ~ 23541888 (+)
ENSDARG00000025081	grnb	24: 36339242 ~ 36364591 (+)
ENSDARG00000010169	myd88	24: 20188914 ~ 20192996 (-)
ENSDARG00000077468	si:ch73-206p6.1	24: 5208171 ~ 5214940 (+)
ENSDARG00000102493	ticam1	22: 4442473 ~ 4445833 (+)
ENSDARG00000045661	irf7	25: 25546789 ~ 25550955 (-)
ENSDARG00000100534	irak4	25: 768014 ~ 774471 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000044490

EXPRESSION

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