Fish Single-cell RNA Database

GENE ID: ENSDARG00000091471

Symbol	Location	Gene type	Genome version	Species
ccdc28a	17: 33388899 ~ 33412868 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000091471 (ccdc28a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000090052	si:dkey-165a24.9	7: 22702224 ~ 22712827 (+)
ENSDARG00000060415	arhgef28a	5: 34827614 ~ 34964830 (-)
ENSDARG00000099139	fbxw5	5: 54446262 ~ 54482245 (-)
ENSDARG00000089856	cita	5: 2409554 ~ 2636078 (-)
ENSDARG00000054026	mustn1a	6: 40841156 ~ 40842768 (-)
ENSDARG00000058638	si:ch211-71m22.1	2: 8586415 ~ 8611675 (-)
ENSDARG00000039152	fbxo36b	2: 16482338 ~ 16485408 (+)
ENSDARG00000059682	slc43a3a	1: 44141758 ~ 44161417 (-)
ENSDARG00000062606	si:dkey-26i13.8	1: 11711226 ~ 11733130 (+)
ENSDARG00000007477	fbxo8	1: 38346043 ~ 38361496 (-)
ENSDARG00000055934	si:ch1073-416j23.1	9: 10781687 ~ 10805231 (-)
ENSDARG00000042627	nhsl1b	20: 30725778 ~ 30889820 (+)
ENSDARG00000091471	ccdc28a	17: 33388899 ~ 33412868 (-)
ENSDARG00000022983	ccdc28a	17: 33409038 ~ 33416020 (-)
ENSDARG00000054537	nhsl1a	17: 30522764 ~ 30591223 (+)
ENSDARG00000071259	fbxo34	17: 10783599 ~ 10813885 (-)
ENSDARG00000006924	fbxo38	14: 38656776 ~ 38690871 (+)
ENSDARG00000104806	fbxw11a	14: 2549313 ~ 2588216 (-)
ENSDARG00000027159	fbxo28	13: 482911 ~ 490569 (+)
ENSDARG00000062855	plekhg7	18: 15887830 ~ 15932704 (-)
ENSDARG00000088130	si:dkey-30c15.10	18: 7425222 ~ 7448047 (-)
ENSDARG00000034941	si:dkey-224e22.2	18: 44746594 ~ 44765515 (+)
ENSDARG00000056639	carmil2	18: 22302635 ~ 22396371 (+)
ENSDARG00000074121	dnmbp	12: 31638045 ~ 31710590 (+)
ENSDARG00000086484	fbxw10	12: 36524084 ~ 36534476 (+)
ENSDARG00000077227	fbxl6	19: 22347627 ~ 22363292 (+)
ENSDARG00000007722	nudt8	15: 499848 ~ 506010 (-)
ENSDARG00000015460	racgap1	23: 33757173 ~ 33775309 (-)
ENSDARG00000074184	arhgap32b	21: 24539896 ~ 24632778 (-)
ENSDARG00000017230	fbxw11b	10: 21444654 ~ 21470593 (+)
ENSDARG00000042308	arhgef18b	22: 10814204 ~ 10891213 (-)
ENSDARG00000087545	fbxo42	22: 191931 ~ 193234 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000091471

EXPRESSION

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