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NOTE: search by id.

EXAMPLES:

species Danio rerio
tissue pituitary
cell type Erythroid cells
gene ENSDARG00000077809
il13
project GSE158142
dataset GSE158142 (20hpf)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •    
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)

CELL TYPE

  • The folded tree shows the cell types of the species covered by the FishSCT.
  • Click on the node of the fold tree to browse the details of the dataset with that cell type.
  • Check the dataset checkbox for dataset selection for multiple search and visualization.
  • If you only selects cell types and no genes, all marker genes of these cell types will be displayed.
  • B cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 B cells 2
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 B cells 10
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 B cells 14
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 B cells 15
  • Granulocyte
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 Granulocyte 1
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 Granulocyte 3
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 Granulocyte 8
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 Granulocyte 16
  • Macrophage
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 Macrophage 7
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 Macrophage 17
  • T cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 T cells 4
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 T cells 6
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 T cells 9
      PRJNA766837 male, adult, untreatment anterior kidney baseline PRJNA766837 T cells 12

  • Click the arrow to add the sample you choose.
  • Support manual input.
  • IDs are separated by  / .

Gene

  • Please fill in the gene ID in FishSCT for multiple search and visualization.
  • If you have symbol, you can quickly search for its ID in FishSCT.
  • Multiple symbols are supported, separated by any punctuation, blank character, or line break.
  • More symbol need more time.
  • If you only selects genes and no cell types, all marker information of these genes will be displayed.

  • Click the arrow to add the gene you choose.
  • Support manual input.
  • Support genes without symbol.
  • IDs are separated by space.


      

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