The download module provides the VCF file download of all SNP loci under the specific genome version of each species. For the loci provided in the attachment, the original SNP information that is not aligned to the specified genome version is integrated and provided for download by species.
| Species Name | File Infomation | Modify Time | Download File Link |
|---|---|---|---|
| Ctenopharyngodon idella | GC_v1 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Monopterus albus | GCF_001952655.1 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Oreochromis niloticus | GCF_001858045.2 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Salmo salar | GCF_000233375.1_ICSASG_V2 | 2023-08-20 | download |
| md5 | 2023-08-20 | download | |
| Ictalurus punctatus | GCF_001660625.1_IpCoco_1.2 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Lates calcarifer | ASM164080v1 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Tachysurus fulvidraco | GCF_003724035.1_ASM372403v1 | 2023-08-20 | download |
| OES013265 | 2023-08-20 | download | |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Oncorhynchus mykiss | GCA_900005705.1_AUL_PRJEB4421_v1 | 2023-08-20 | download |
| GCF_013265735.2_USDA_OmykA_1.1 | 2023-08-20 | download | |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Cyprinus carpio | GCF_000951615.1 | 2023-08-20 | download |
| GCF_018340385.1_ASM1834038v1 | 2023-08-20 | download | |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Labeo rohita | GCA_004120215.1_ASM412021v1 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Channa argus | GCA_004786185.1 | 2023-08-20 | download |
| md5 | 2023-08-20 | download | |
| Hypophthalmichthys molitrix | CNP0000974 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download | |
| Paramisgurnus dabryanus | ihb_00 | 2023-08-20 | download |
| Unmaping data | 2023-08-20 | download | |
| md5 | 2023-08-20 | download |
The FishSNP database code package encompasses functionalities such as download, quality control, SNP calling, and more. This process is designed to operate within a Linux environment and requires seamless compatibility with Conda and GATK4. For comprehensive details, please refer to the GitHub repository (https://github.com/hliihbcas/FishSNP) or consult the package's documentation.
| File Name | Time | Download | Brief Introdunction |
|---|---|---|---|
| Pipelines_for_FishSNP_1.1.tar.gz | 2024/02/04 | download | The code package of FishSNP database, including download, quality control, SNP calling, etc. |
| SNP_calling_source.tar.gz | 2024/02/04 | download | The file is a genome index file required for SNP Calling testing. |