ACCESS

























 PITBAG: Platform of Information and Toolkits for Breeding of Aquaculture Germplasm



 DATABASES




FishCODE:

comprehensive omics data exploration in fish research


FishSNP:

fish SNP database


GCGD:

grass carp genome database


FishGET:

fish gene expression and transcriptome database


FishSCT:

fish single cell transcriptome database


FishSED:

fish spatial expression database


 ONLINE TOOLS



paternity marker set seeker of certain populations

change the distance from data to article pictures to zero

an AI-based fish size measurement tool


 OTHER TOOLS



 DATABASES




FVD:

fish-associated virus database


 ONLINE TOOLS



predict hosts of coronaviruses

some sequence manipulation tools

online microarray data analysis




 DOWNLOAD



 DATA

 SOFTWARE



 CITATIONS



 PITBAG

Chen Y, Shi M, Zhang W, Cheng Y, Wang Y, Xia X-Q. The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations. Database, 2017, 2017:bax051. 10.1093/database/bax051.

Guo C, Duan Y, Ye W, Zhang W, Cheng Y, Shi M, Xia X-Q, FishGET: a fish gene expression and transcriptome database with improved accuracy and visualization, iScience, 2023, 26: 106539. 10.1016/j.isci.2023.106539.

Guo C, Ye W, Shi M, Duan Y, Zhang W, Cheng Y, Xia X-Q. FishSCT: a zebrafish-centric database for exploration and visualization of fish single-cell transcriptome. Science China Life Sciences, 2023, 66. 10.1007/s11427-022-2293-4.

Guo C, Ye W, Cao D, Shi M, Zhang W, Cheng Y, Wang Y, Xia X-Q. Unraveling the stereoscopic gene transcriptional landscape of zebrafish using FishSED, a fish spatial expression database with multispecies scalability. Science China Life Sciences, 2023, 66. 10.1007/s11427-023-2418-2.

Li H, Shi M, Ren K, Zhang L, Ye W, Zhang W, Cheng Y, Xia X-Q. Visual Omics: A web-based platform for omics data analysis and visualization with rich graph-tuning capabilities. Bioinformatics, 2023, 39(1): btac777. 10.1093/bioinformatics/btac777.


 OTHER TOOLS

Chen Y, Shi M, Cheng Y, Zhang W, Tang Q, Xia X-Q. FVD: The fish-associated virus database. Infection, Genetics and Evolution, 2018, 58:23-26. 10.1016/j.meegid.2017.11.004.

Tang Q, Song Y, Shi M, Cheng Y, Zhang W, Xia X-Q. Inferring the hosts of coronavirus using dual statistical models based on nucleotide composition. Scientific Reports, 2015, 5:17155. 10.1038/srep17155.

Xia X, McClelland M, Wang Y. WebArray: an online platform for microarray data analysis. BMC Bioinformatics. 10.1186/1471-2105-6-306.

Wang Y, McClelland M, Xia XQ. Analyzing microarray data using WebArray. Cold Spring Harbor Protocols. 10.1101/pdb.prot5260.

Xia XQ, McClelland M, Porwollik S et al. WebArrayDB: Cross-platform microarray data analysis and public data repository. Bioinformatics. 10.1093/bioinformatics/btp430.




CONTACT:   Xia, Xiao-Qin, PhD       Email:   xqxia@ihb.ac.cn