ACCESS























 DATABASES




GitAB:

genomic information and technology for aquacultural breeding


FishSNP:

fish SNP database


FVD:

fish-associated virus database


FishGET:

fish gene expression and transcriptome database


FishSCT:

fish single cell transcriptome database


FishSED:

fish spatial expression database


GCGD:

grass carp genome database



 ONLINE TOOLS



paternity marker set seeker of certain populations

change the distance from data to article pictures to zero

predict hosts of coronaviruses

some sequence manipulation tools

online microarray data analysis

an AI-based fish size measurement tool



 DOWNLOAD



 DATA

 SOFTWARE



 CITATIONS



 DATABASES

Chen Y, Shi M, Cheng Y, Zhang W, Tang Q, Xia X-Q. FVD: The fish-associated virus database. Infection, Genetics and Evolution, 2018, 58:23-26. 10.1016/j.meegid.2017.11.004.

Guo C, Duan Y, Ye W, Zhang W, Cheng Y, Shi M, Xia X-Q, FishGET: a fish gene expression and transcriptome database with improved accuracy and visualization, iScience, 2023, 26: 106539. 10.1016/j.isci.2023.106539.

Guo C, Ye W, Shi M, Duan Y, Zhang W, Cheng Y, Xia X-Q. FishSCT: a zebrafish-centric database for exploration and visualization of fish single-cell transcriptome. Science China Life Sciences, 2023, 66. 10.1007/s11427-022-2293-4.

Chen Y, Shi M, Zhang W, Cheng Y, Wang Y, Xia X-Q. The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations. Database, 2017, 2017:bax051. 10.1093/database/bax051.


 ONLINE TOOLS

Li H, Shi M, Ren K, Zhang L, Ye W, Zhang W, Cheng Y, Xia X-Q. Visual Omics: A web-based platform for omics data analysis and visualization with rich graph-tuning capabilities. Bioinformatics, 2023, 39(1): btac777. 10.1093/bioinformatics/btac777.

Tang Q, Song Y, Shi M, Cheng Y, Zhang W, Xia X-Q. Inferring the hosts of coronavirus using dual statistical models based on nucleotide composition. Scientific Reports, 2015, 5:17155. 10.1038/srep17155.

Xia X, McClelland M, Wang Y. WebArray: an online platform for microarray data analysis. BMC Bioinformatics. 10.1186/1471-2105-6-306.

Wang Y, McClelland M, Xia XQ. Analyzing microarray data using WebArray. Cold Spring Harbor Protocols. 10.1101/pdb.prot5260.

Xia XQ, McClelland M, Porwollik S et al. WebArrayDB: Cross-platform microarray data analysis and public data repository. Bioinformatics. 10.1093/bioinformatics/btp430.




CONTACT:   Xia, Xiao-Qin, PhD       Email:   xqxia@ihb.ac.cn