| bioproject id |
PRJNA513222
to NCBI
|
| key word |
Challenge; dendritic cell; Ctenopharyngodon idella; Bacillus subtilis; cytokine; transcriptome; PROBIOTIC BACTERIA; T-CELLS; ULCERATIVE-COLITIS; IN-VITRO; RESPONSES; RECEPTOR; IDENTIFICATION; PEPTIDOGLYCAN; MACROPHAGES; POPULATION |
| experiment type |
challenge |
| publication |
Zhou C et al., "Regulatory Effect of Bacillus subtilis on Cytokines of Dendritic Cells in Grass Carp (Ctenopharyngodon Idella)", International Journal of Molecular Sciences, 2019; 20: 389. |
| description |
Bacillus subtilis is a usual group of probiotics that have been widely used in the feed industry, it can increase host resistance to pathogens and balance the immune responses. But the regulatory mechanism of Bacillus subtilis on the host immune system remains unclear in teleost. In this data, we collected Bacillus subtilis stimulated grass carp DCs at 0, 4, and 18 h, constructed and sequenced transcriptomic libraries respectively. This study provides a DCs-specific transcriptome data in grass carp by Bacillus subtilis stimulation, allowing us to illustrate the molecular mechanism of DCs-mediated immune response triggered by probiotics in grass carp. |
| abstract |
Bacillus subtilis is a common group of probiotics that have been widely used in the feed industry as they can increase host resistance to pathogens and balance the immune response. However, the regulatory mechanism of Bacillus subtilis on the host immune system remains unclear in teleosts. In this study, we isolated and enriched dendritic cells from white blood cells (WBCs), and then stimulated them with Bacillus subtilis. Morphological features, specific biological functions, and authorized functional molecular markers were used in the identification of dendritic cells. Subsequently, we collected stimulated cells at 0, 4, and 18 h, and then constructed and sequenced the transcriptomic libraries. A transcriptome analysis showed that 2557 genes were up-regulated and 1708 were down-regulated at 4 h compared with the control group (|Fold Change| ≥ 4), and 1131 genes were up-regulated and 1769 were down-regulated between the cells collected at 18 h and 4 h (|Fold Change| ≥ 4). Gene Ontology (GO) annotations suggested many differentially expressed genes (DEGs) (p < 0.05 and |Fold Change| ≥ 4) were involved in immune-related biological functions including immune system progress, cytokine receptor binding, and cytokine binding. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis showed that the cytokine⁻cytokine receptor interaction pathways were significantly enriched at both time points (p < 0.05), which may play a key role in the response to stimulation. Furthermore, mRNA expression level examination of several pro-inflammatory cytokines and anti-inflammatory cytokines genes by quantitative real-time polymerase chain reaction (qRT-PCR) indicated that their expressions can be significantly increased in Bacillus subtili, which suggest that Bacillus subtilis can balance immune response and tolerance. This study provides dendritic cell (DC)-specific transcriptome data in grass carp by Bacillus subtilis stimulation, allowing us to illustrate the molecular mechanism of the DC-mediated immune response triggered by probiotics in grass carp. |
Gene
RNA