Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

BLAST SEARCH

Data Input

Please select the way data input!
Paste sequences in the textbox below
Upload a file
Enter query sequences here in FASTA format
Or upload sequence file

General Search Options

[-p]: Program

[-db]: DataBase

[-evalue]: Expecatation value (E) threshold for saving hits

[-word_size]: Word size for wordfinder algorithm (length of best perfect match)

[-gapopen]: Cost to open a gap

[-gapextend]: Cost to extend a gap

[-penalty]: Penalty for a nucleotide mismatch

[-reward]: Reward for a nucleotide match

Formatting Options

[-outfmt]: Alignment view options

Query Filtering Options

[-dust]: Filter query sequence with DUST (Format: 'yes', 'level window linker', or 'no' to disable)

Restrict Search Or Results

[-max_target_seqs]: Maximum number of aligned sequences to keep