Gene
RNA
| bioproject id | PRJCA005590 to NCBI |
| key word | growth; grass carp; transcriptome; growth rates; ceRNA; fatty-acid oxidation; insulin-secretion; fish; genome; brain; expression; reconstruction; metabolism; mutations; evolution |
| experiment type | growth |
| publication | Ye, WD et al. "Comprehensive analysis of hub mRNA, lncRNA and miRNA, and associated ceRNA networks implicated in grass carp (Ctenopharyngodon idella) growth traits." GENOMICS(2021). |
| description | Grass carp growth |
| abstract | Grass carp (Ctenopharyngodon idella) is the most productive freshwater aquaculture fish in worldwide. However, the molecular mechanism of its growth traits has not been fully elucidated. Whole transcriptome analysis of the brain and hepatopancreas of 29 six-month-old grass carp with different growth rates was performed. Weighted gene co-expression network analysis (WGCNA) was used to construct a weighted gene co-expression network of mRNA, miRNA and lncRNA separately. A total of 35 hub mRNAs, 47 hub lncRNAs and 33 hub miRNAs were identified from the brain, 37 hub mRNAs, 110 hub lncRNAs and 36 hub miRNAs were identified from the hepatopancreas. The ceRNAnetworks in the brain and hepatopancreas were involved in brain development and nutrient metabolism, respectively. Overall, this is the first investigation of the growth-related transcriptomic characteristics in the brain and hepatopancreas of grass carp, thus will help us to further explore the molecular mechanism of grass carp growth rate. |
| sample id | sample name | tissue | strain | treatment | description | |
|---|---|---|---|---|---|---|
| 1. | CRR295632 | nan | brain | nan | big fish, family 1 | nan |
| 2. | CRR295633 | nan | brain | nan | big fish, family 1 | nan |
| 3. | CRR295634 | nan | brain | nan | big fish, family 1 | nan |
| 4. | CRR295635 | nan | brain | nan | big fish, family 2 | nan |
| 5. | CRR295636 | nan | brain | nan | big fish, family 2 | nan |
| 6. | CRR295637 | nan | brain | nan | big fish, family 2 | nan |
| 7. | CRR295638 | nan | brain | nan | big fish, family 3 | nan |
| 8. | CRR295639 | nan | brain | nan | big fish, family 3 | nan |
| 9. | CRR295640 | nan | brain | nan | big fish, family 3 | nan |
| 10. | CRR295641 | nan | brain | nan | medium fish, family 1 | nan |
| 11. | CRR295642 | nan | brain | nan | medium fish, family 1 | nan |
| 12. | CRR295643 | nan | brain | nan | medium fish, family 1 | nan |
| 13. | CRR295644 | nan | brain | nan | medium fish, family 2 | nan |
| 14. | CRR295645 | nan | brain | nan | medium fish, family 2 | nan |
| 15. | CRR295646 | nan | brain | nan | medium fish, family 2 | nan |
| 16. | CRR295647 | nan | brain | nan | medium fish, family 3 | nan |
| 17. | CRR295648 | nan | brain | nan | medium fish, family 3 | nan |
| 18. | CRR295668 | nan | liver | nan | medium fish, family 1 | nan |
| 19. | CRR295649 | nan | brain | nan | medium fish, family 3 | nan |
| 20. | CRR295650 | nan | brain | nan | small fish, family 1 | nan |
| 21. | CRR295651 | nan | brain | nan | small fish, family 1 | nan |
| 22. | CRR295652 | nan | brain | nan | small fish, family 1 | nan |
| 23. | CRR295653 | nan | brain | nan | small fish, family 2 | nan |
| 24. | CRR295654 | nan | brain | nan | small fish, family 2 | nan |
| 25. | CRR295655 | nan | brain | nan | small fish, family 2 | nan |
| 26. | CRR295656 | nan | brain | nan | small fish, family 3 | nan |
| 27. | CRR295657 | nan | brain | nan | small fish, family 3 | nan |
| 28. | CRR295658 | nan | brain | nan | small fish, family 3 | nan |
| 29. | CRR295659 | nan | liver | nan | big fish, family 1 | nan |
| 30. | CRR295660 | nan | liver | nan | big fish, family 1 | nan |
| 31. | CRR295661 | nan | liver | nan | big fish, family 1 | nan |
| 32. | CRR295662 | nan | liver | nan | big fish, family 2 | nan |
| 33. | CRR295663 | nan | liver | nan | big fish, family 2 | nan |
| 34. | CRR295664 | nan | liver | nan | big fish, family 2 | nan |
| 35. | CRR295665 | nan | liver | nan | big fish, family 3 | nan |
| 36. | CRR295666 | nan | liver | nan | big fish, family 3 | nan |
| 37. | CRR295667 | nan | liver | nan | big fish, family 3 | nan |
| 38. | CRR295669 | nan | liver | nan | medium fish, family 1 | nan |
| 39. | CRR295670 | nan | liver | nan | medium fish, family 1 | nan |
| 40. | CRR295671 | nan | liver | nan | medium fish, family 2 | nan |
| 41. | CRR295672 | nan | liver | nan | medium fish, family 2 | nan |
| 42. | CRR295673 | nan | liver | nan | medium fish, family 2 | nan |
| 43. | CRR295674 | nan | liver | nan | medium fish, family 3 | nan |
| 44. | CRR295675 | nan | liver | nan | medium fish, family 3 | nan |
| 45. | CRR295676 | nan | liver | nan | medium fish, family 3 | nan |
| 46. | CRR295677 | nan | liver | nan | small fish, family 1 | nan |
| 47. | CRR295678 | nan | liver | nan | small fish, family 1 | nan |
| 48. | CRR295679 | nan | liver | nan | small fish, family 1 | nan |
| 49. | CRR295680 | nan | liver | nan | small fish, family 2 | nan |
| 50. | CRR295681 | nan | liver | nan | small fish, family 2 | nan |
| 51. | CRR295682 | nan | liver | nan | small fish, family 2 | nan |
| 52. | CRR295683 | nan | liver | nan | small fish, family 3 | nan |
| 53. | CRR295684 | nan | liver | nan | small fish, family 3 | nan |
| 54. | CRR295685 | nan | liver | nan | small fish, family 3 | nan |