Bioproject ID: PRJNA264233


bioproject id PRJNA264233      to NCBI
key word Challenge; GCRV; grass carp reovirus (GCRV); major outer capsid protein VP4; molecular function; host/pathogen protein interaction; RIG-I-like receptor signaling pathway; immune evasion; ENDOPLASMIC-RETICULUM STRESS; GENUS AQUAREOVIRUS; INNATE IMMUNITY; VIRUS; IFN; REVEALS; RECOGNITION; ACTIVATION; PATHWAYS; SEQUENCE
experiment type challenge
publication H Su, et al. "Grass Carp Reovirus Major Outer Capsid Protein VP4 Interacts with RNA Sensor RIG-I to Suppress Interferon Response." Biomolecules10.4(2020).
description The goal is to provide a complete and novel transcriptome dataset of grass carp
abstract Diseases caused by viruses threaten the production industry and food safety of aquaculture which is a great animal protein source. Grass carp reovirus (GCRV) has caused tremendous loss, and the molecular function of viral proteins during infection needs further research, as for most aquatic viruses. In this study, interaction between GCRV major outer capsid protein VP4 and RIG-I, a critical viral RNA sensor, was screened out by GST pull-down, endogenous immunoprecipitation and subsequent LC-MS/MS, and then verified by co-IP and an advanced far-red fluorescence complementation system. VP4 was proved to bind to the CARD and RD domains of RIG-I and promoted K48-linked ubiquitination of RIG-I to degrade RIG-I. VP4 reducedm RNA and promoter activities of key genes of RLR pathway and sequential IFN production. As a consequence, antiviral effectors were suppressed and GCRV replication increased, resulting in intensified cytopathic effect. Furthermore, results of transcriptome sequencing of VP4 stably expressed CIK (C. idella kidney) cells indicated that VP4 activated the My D88-dependent TLR pathway. Knockdown of VP4 obtained opposite effects. These results collectively revealed that VP4 interacts with RIG-I to restrain interferon response and assist GCRV invasion. This study lays the foundation for anti-dsRNA virus molecular function research in teleost and provides a novel insight into the strategy of immune evasion for aquatic virus.


Sample Information


sample id sample name tissue strain treatment description
1. SRR1618542 Spleen_susceptible spleen Grass carp reovirus (GCRV) spleen of susceptible fish Spleen of GCRV-susceptible grass carp
2. SRR1618520 Spleen_resistant spleen Grass carp reovirus (GCRV) spleen of resistant fish Spleen of GCRV-resistant grass carp
3. SRR1618540 Kidney_susceptible head-kidney Grass carp reovirus (GCRV) head-kidney of susceptible fish Head-kidney of GCRV-susceptible grass carp
4. SRR1618541 Kidney_resistant head-kidney Grass carp reovirus (GCRV) head-kidney of resistant fish Head-kidney of GCRV-resistant grass carp