Bioproject ID: PRJNA421052


bioproject id PRJNA421052      to NCBI
key word vision;SCHIFF-BASE COUNTERION;CONE VISUAL PIGMENTS;COLOR-VISION;AMINO-ACIDS;PHYLOGENETIC-RELATIONSHIPS;WAVELENGTH DISCRIMINATION;PERCIFORMES CICHLIDAE;SPECTRAL SENSITIVITY;ABSORPTION MAXIMUM;RHODOPSIN GENE
experiment type vision
publication Musilova, Z. , et al. "Vision using multiple distinct rod opsins in deep-sea fishes." Science 364.
description The goal of this study was to investigate the visual system evolution of teleost fishes with a special focus on deep-sea species.
abstract Vertebrate vision is accomplished through light-sensitive photopigments consisting of an opsin protein bound to a chromophore. In dim light, vertebrates generally rely on a single rod opsin [rhodopsin 1 (RH1)] for obtaining visual information. By inspecting 101 fish genomes, we found that three deep-sea teleost lineages have independently expanded their RH1 gene repertoires. Among these, the silver spinyfin (Diretmus argenteus) stands out as having the highest number of visual opsins in vertebrates (two cone opsins and 38 rod opsins). Spinyfins express up to 14 RH1s (including the most blueshifted rod photopigments known), which cover the range of the residual daylight as well as the bioluminescence spectrum present in the deep sea. Our findings present molecular and functional evidence for the recurrent evolution of multiple rod opsin-based vision in vertebrates.


Sample Information


sample id sample name tissue strain treatment description
1. SRR8242429 Pfluviatilis_11 retina nan untreatment Retinal transcriptome of Perca fluviatilis: adult indv 1
2. SRR8242431 Pfluviatilis_13 retina nan untreatment Retinal transcriptome of Perca fluviatilis: adult indv 3
3. SRR8242432 Pfluviatilis_12 retina nan untreatment Retinal transcriptome of Perca fluviatilis: adult indv 2