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  • Gene/RNA table, GTF file, FASTA file of RNA, expression table of gene/RNA, and co-expression table for each species are available.
  • The gene/RNA table is one such summary table that we prepared; it includes such fundamentals as species, type, characteristic, location, NR/GO/KEGG information, and project details.

  • zebrafish (Danio rerio)


    Genome version: GRCz11
    RNA table: zebrafish_RNA_summary.txt
    gene table: zebrafish_gene_summary.txt
    gtf file: zebrafish.gtf.zip
    fasta file: zebrafish_RNA.fa.zip
    TPM of transcripts: zebrafish_RNA.tpm.zip
    expression of gene: zebrafish_gene.tpm.zip
    network: zebrafish_co_expression.zip

    grass carp (Ctenopharyngodon idella)


    Genome version: v1_2015/06_NatureGenetics
    RNA table: grass_carp_RNA_summary.txt
    gene table: grass_carp_gene_summary.txt
    gtf file: grass_carp.gtf.zip
    fasta file: grass_carp_RNA.fa.zip
    TPM of transcripts: grass_carp_RNA.tpm.zip
    expression of gene: grass_carp_gene.tpm.zip
    network: grass_carp_co_expression.zip

    rainbow trout (Oncorhynchus mykiss)


    Genome version: USDA_OmykA_1.1
    RNA table: rainbow_trout_RNA_summary.txt
    gene table: rainbow_trout_gene_summary.txt
    gtf file: rainbow_trout.gtf.zip
    fasta file: rainbow_trout_RNA.fa.zip
    TPM of transcripts: rainbow_trout_RNA.tpm.zip
    expression of gene: rainbow_trout_gene.tpm.zip
    network: rainbow_trout_co_expression.zip

    eurasian perch (Perca fluviatilis)


    Genome version: GENO_Pfluv_1.0
    RNA table: eurasian_perch_RNA_summary.txt
    gene table: eurasian_perch_gene_summary.txt
    gtf file: eurasian_perch.gtf.zip
    fasta file: eurasian_perch_RNA.fa.zip
    TPM of transcripts: eurasian_perch_RNA.tpm.zip
    expression of gene: eurasian_perch_gene.tpm.zip
    network: eurasian_perch_co_expression.zip

    striped catfish (Pangasianodon hypophthalmus)


    Genome version: GENO_Phyp_1.0
    RNA table: striped_catfish_RNA_summary.txt
    gene table: striped_catfish_gene_summary.txt
    gtf file: striped_catfish.gtf.zip
    fasta file: striped_catfish_RNA.fa.zip
    TPM of transcripts: striped_catfish_RNA.tpm.zip
    expression of gene: striped_catfish_gene.tpm.zip
    network: striped_catfish_co_expression.zip

    bowfin (Amia calva)


    Genome version: AmiCal1
    RNA table: bowfin_RNA_summary.txt
    gene table: bowfin_gene_summary.txt
    gtf file: bowfin.gtf.zip
    fasta file: bowfin_RNA.fa.zip
    TPM of transcripts: bowfin_RNA.tpm.zip
    expression of gene: bowfin_gene.tpm.zip
    network: bowfin_co_expression.zip

    tiger barb (Puntius tetrazona)


    Genome version: ASM1883169v1
    RNA table: tiger_barb_RNA_summary.txt
    gene table: tiger_barb_gene_summary.txt
    gtf file: tiger_barb.gtf.zip
    fasta file: tiger_barb_RNA.fa.zip
    TPM of transcripts: tiger_barb_RNA.tpm.zip
    expression of gene: tiger_barb_gene.tpm.zip
    network: tiger_barb_co_expression.zip

    mexican tetra (Astyanax mexicanus)


    Genome version: Astyanax_mexicanus-2.0
    RNA table: mexican_tetra_RNA_summary.txt
    gene table: mexican_tetra_gene_summary.txt
    gtf file: mexican_tetra.gtf.zip
    fasta file: mexican_tetra_RNA.fa.zip
    TPM of transcripts: mexican_tetra_RNA.tpm.zip
    expression of gene: mexican_tetra_gene.tpm.zip
    network: mexican_tetra_co_expression.zip