G238534


Basic Information

Item Value
gene id G238534
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 1668410 ~ 1669244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU270647
CTCGTGTTCAGTGGGACGTGCAGACACAAGATAACAGTTTGGCGCCCTTCTTATAGTTTTGTCTGATGTCCTGAATTAACAGCAAATGTGGAGGAGCAGGTTTCTCAGGGGGGCAGGCTGTCTCTTGCAGGGGACGGGCTGTAGTCCTTGTAAACCCTCTCATCTTCCTCCCTGGAGATATCTATCTTTTTACAAGCCATGCTTTAGGCCAGTCCTGAAGAACTCTTTTGAAAAGCATTGTTTTGAAAAGCGATTAAGACCCGCTGTTGCCTTATATTTCTGCAGAACATTGAGAAAAGATGCAAAGTCTATCATCGATTTTCCTGTCCAGCCCCTCACAGTGACTGATATCAAGCAGTATCTTCGTTCTAAAGATATCCCTTTCCATGATGGCTACAGCTGCTTACATGCTTCTAGTATT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU270647 True 421 TUCP 0.45 2 1668410 1669244

Neighbor

gene id symbol gene type direction distance location
CI01000055_01640597_01654583 SEMA4GB, SEMA4G coding upstream 13599 1640597 ~ 1654811 (+)
CI01000055_01572679_01573885 ARL3.1.S, ARL3, ARL3.1 coding upstream 94210 1572679 ~ 1574200 (+)
CI01000055_01534850_01561806 TIMP2, TIMP2A coding upstream 106064 1534552 ~ 1562346 (+)
CI01000055_01506298_01506585 NA coding upstream 161226 1505809 ~ 1507184 (+)
CI01000055_01494840_01495085 NA coding upstream 173017 1493953 ~ 1495393 (+)
CI01000055_01671436_01674983 C13H10ORF2, PEO1, C1H10ORF2, CUNH10ORF2, CLG8-24H10ORF2, CLG19H10ORF2, C19H10ORF2, CLG05H10ORF2, CLG5H10ORF2 coding downstream 2192 1671436 ~ 1675057 (+)
CI01000055_01676093_01680914 GALK1 coding downstream 6849 1676093 ~ 1681983 (+)
CI01000055_01694900_01711518 LLGL2 coding downstream 25656 1694900 ~ 1712042 (+)
CI01000055_01729194_01746887 NA coding downstream 59950 1729194 ~ 1747729 (+)
CI01000055_01754128_01776546 TMEM94 coding downstream 84884 1754128 ~ 1776763 (+)
G238636 NA non-coding upstream 2171 1665944 ~ 1666239 (+)
G238625 NA non-coding upstream 77702 1589710 ~ 1590708 (+)
G238621 NA non-coding upstream 85778 1582400 ~ 1582632 (+)
G238615 NA non-coding upstream 91828 1576341 ~ 1576582 (+)
G238614 NA non-coding upstream 135495 1532667 ~ 1532915 (+)
G238644 NA non-coding downstream 55719 1724963 ~ 1725163 (+)
CI01000055_01796139_01801260 MBTD1, MBTD1.L non-coding downstream 131277 1796139 ~ 1803517 (+)
G238520 NA non-coding downstream 180805 1850049 ~ 1867893 (+)
G238507 NA non-coding downstream 199710 1868954 ~ 1877532 (+)
G238651 NA non-coding downstream 248444 1917688 ~ 1917915 (+)
G237840 NA other upstream 1248478 418925 ~ 419932 (+)
G237680 NA other upstream 1647248 20902 ~ 21162 (+)
CI01000055_02542526_02542861 NA other downstream 871878 2542216 ~ 2544118 (+)
G239761 NA other downstream 2493006 4162250 ~ 4213402 (+)
G239755 NA other downstream 2584966 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 2594783 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 3496248 5162990 ~ 5166647 (+)

Expression


Co-expression Network