XLOC_010004 (nes)


Basic Information

Item Value
gene id XLOC_010004
gene name nes
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29043813 ~ 29057849 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019910
ATGGAGCTTCTGGGTGTCCGACAGCCATTTGGCCCTCAGTTTCAGGAGGAAAAGTACCAGATGCTAGAGCTGAACCACCGCCTTGAATCATACTTGGGCCGTGTGAAACTTCTGGAGGAAGAGAACAAGCTACTTCGAGAGGAGATCCACACTCTCAAGAGCAGCAGGGACCCAGCAGGCCAACGTAAAGCCCAGGAGGAGGCTCTCAGTCAGGCCAGGAGGATGATGGAGGAGGCCTGGAGAAAGAAAGACTGTGTGGAGCTGGAGGTAGAGAATCTGATGGAGGATATGGAGAAGGTGAGCTTTCAAAGAAAGAAGGTGAAGACTGCACAGGCTGAAGCTCAGAGGAAGCTCACAGAGAGCAGAAAGGAGCTGGAAGAGGAGCGCAGGGCTCAGATTTGGCTTAGAGAGAAGGTCGGTCAACTCGAGAAAGACCTCATGCTGCAGATGCAAGTGCACCAGGAGAACATGGAAACCATGCAGGCCTCACTGAAACAGACAAAGCAGGTCCTAATGGCTCCACAGCGTGTGCAAGCTACCAGCATCCCAGACCTGGGGCAGGAGTATGGCTACAAGGCAGCTCAAGCCTGGCAGGAGGCAGCCAACAACTATCAGAAACAGGTTGGACGTCTGGAGGAGAGTCTGAACCAGACAAAAGCTAACATGACAAAGATTTACCAGGAGAAGAGAGAGAGCCAGCGTCAGGTACAGCATCTGGCCAAAGAGCTGGAGAGCACGAGGATCAAGAGGCAGATGCTGGAGAAACATGCCATGCAGCAAAGAGAAGAACAGAAAGAGGAGCTTCAACATCTTCAGGCCCAAGTAAACACCCTGGAGTTGGAGAAAGACTGTCTGGGGCAGCAGATTGACAGCCTGATGTTGGATAGACAACATCTGCTGCAGGTGAAGATGTCTCTTGGACTGGAGGTGGCAACATACAGAGCTTTGCTGGACAGCGAGGGCCTGAGAATCGACAGACCAACACCAAACAAGACCAGCTCTACTGTCTTTTTAGatGCACTCTCAAAGCCCACTGGGATCCAGTCAACTTCTCAAACCACTGCTGCTTCCTGCCTTCTCAGCAGTTCTGTGTCTACAAGTCACAGATCAATCGCCTCATCCCGCAGTCTGCTGACCAGTGCGGCTCCGTCATGGACACTGACACGAGGGACTCCACAGAGACCACCAAGCAGTACCTCGATGACAGAAAAGACAGAGGATCACATATCTGAGGAGACTAAGAGATCTGCTGAGGAGTCTGTGGATCAATTACAGCAAGAGAAAGTCCAGCAAGACTGGACTCTCGAATCCACTCTTCCCAAAACATCTGCAGAACCAAAACCAGAGCTTCAACCAGAAGAAATTAAGGTGGAAGACGAAGCAAATGAACCCCAACAAGCTCATATGGTTGAATCTAAAACTGATGAATCTGAACTGACTAGTGTACCAGCTGAGCAACAAGGAAGTATGTCCCAAACTCCAGAGACAAAGAGCTGGGCTGGTCATTTCAATGATCCTGCAGAAGTTTCAGAAGACGGAAAGGATGAAGACACTGAAGTGTCTGTCGAAATGGCTCGTATCTCACATGCACCCAAGGTTGCTTGGGAAGAAATCAAATCTGCAGTAGAGGATGAAAAAGATGATGCTTCTGAGATGGACGTAAGATCAGAGATCATCAGTGAAAGCCACACATTTGCATATGGAGATGCAGAGAATGATAGTAATACATTAACATCAAGCCATATCAGTCAAAACACCAATGCACTGGCTTCATCTTTCCTTGAGCAAGGAACTCTAGATTCAGCTAGTTATTTTGGCTATGAGGCAACAAATGAAAATCTTATGAAGGAAGAGGAACTGGACAATGTGAGCAATATTAGCGAGGAGGTGACAGAACAATTGAACAGTGAAACTGAGGCAGCTATTGATTCAATCAATGAGTGGGACAGACAGGAAGAAAGTGAACCAGAGAATGAGACCAAAGTGATGACTTCTTACTTTGAGGTAGAAGAGGGAGAAATGAGCATCAATACTGACACGAAAGATAAAACTGAAGATGACATAGAAAGGGAAGAGTTAGAAGTGACAGAAAGAGAAATTCTAGTGCAAAGTGCAGGTGGAATGCTGGGTGTAGATTTACCCAATGACACTGATCATCAGGATGAGCACAATCTACCTCAGATAGAGCTGAACGAAGACCAATCTGAGGCAGAAGAAGAAAATCAAAAAGAAAAGCAATGTGATGAAGATGACTCCCCAAACATATCAGCCTCATTGAAAACTGACCCAGGAGAAGGAGACAGTTACAGCCAGGAGCACACGCTGGCAGACACACGGCCCTTGATCCGTTATAAGAGCGATGAGGAAACCTCACACCACATCGGTGAGACCAGTGACAGTGAGGATGAGAAAGAAAGAATTGATCAAGGCCACTTGAATGAGAAACGTTTTAACACTATGGAGGATCTCACTGAAGAACCAGACATGGAGGTCACCGGAAAGATGAGGCTGGAGGATCTTGTTTCTAATGAAGAAGCTGCAGCTGACGATGTGGCATCTGTGATGTTTCAGAAAGTCTCTGGAGACCATGAAAGTTTGGATGTGGTGGTGCAAGAAAGTGAACGCAAGGGTAATCTGGAGAAGGAAGATAGTGGTGATGCTGATAATATGAGAGACAATAAGGAAGAAGATGTCAGTGTTTTTGAGCAAAATGAGAACCAGCAACTGACTGAACACCAGCATGTTCACACAGAACAGGTTGAGGATAAACCAGTCCATTCACATGAAACTCAAGAACACGTCAACACGGAGTTTTCATCCACATTTTCTGAAAGATCTCAGCAAGAGCAACTGGAAGAATCAAGTCTGACTATGTTTGAAGATGAAGCTGCAACCAAAGAAGCAGAAGATTCGGATGTCTCTATGCACACCAACATAGATCTGATTGACAGTCGCTCTTTAGAGAGCGAGATAAACGGTCAGCCAGACATTATGACCTCAGACATGGCCAACTCTGAGTGCAATAGCTCAGAAGACGAGTCTCCAAATGCCAGCCAGTGCTTTCAGAACACAAGCCTTTTAGCAGCGGCGACTCCTAATGAACAGCCATTAACCTTTACTAATGAAGTCTCCAAGGCTGATTATGTGTCTGACAACAACGACGTGCCTGAAGAAGTGCTCAGTGAGGAGAAGAGCACTGATGAGCCCAAGGCCTCTCAGATTGATGACTTGGAGAATTTTAACATTTGGGGGGAAAGCACGAGCATTTCAGATGCAGCCCAGACCACACATGCAAGCATGGATGAACATTCAAGCATTTCCCCAGTGAATGAGAATCTGGAAAGCTCAAACAAAATACCAAGTGTGGCGGAAAACATCTTTGGACATTTTGAAGAACATCTCGAAAGGTCAGTGGAGAGCTTTCCAGAAAAAGAAGTGACTGTGATGGACTTTGAGAACAACGATTTAGGAGAGGAATTTCAGTCGAAGCAAATGAAAAGTGAGATTCACAGCTTCTTCAGCACTAGTTTGAAGCAAGATTTCTGGAGCGAAGGGAAAATGGAGATGGCAGCTACTTATGATCCCGCCAAAACTGAAGACTTAAATCAGGCCATGGTCTTTGGAGAGGAGTGGAGAGAAATAGGAGTGCAATCAGCGAATGGAGATACTAAAGAAGAGATGGAGATCCTCAAAATCAGGGATGATAAGCAAAAAGATGGACAGCCAGCGCAGAGCAAGATAGTCCAGTCAGATGATTCTGCTGATGAGGGGGATTCCTGGTCATCTGGTGATGAGTAAAACCCTAATGATGTTTTAAGACAAAACCAAAAAGAGCCAAAATGGACTATTGTGATcgaagacattcattcattcatttattttccttcagcttagtaagTGAGGAaaattgccacagcggaatgaaccgccaacttttccaacatatgttttaaacatacacatacactctcGCTtttacacaaacactcatacactgacTACGGCCATTTTAGTACAATGTAATTCACTAATACAGCATATCtttagaccagggatgggcaaacttgatcctcgagggccggtgtccctgcagagttttgttccaacactaatcaaacacacctgaacaaactaatcagtgtcttcaagatcacttgaactctatagggaggtctgtttgaatagggttggagctaaactatgcaggacactggccctccaggatcaagtttgcccacacctgctttagactgtggggaaaccggagcacccggaggacactcacatgaacatggggagaacatgcaaactccacacagaaatgccaactgacccagcggacacttgaaccagcgaacttctagctgtgaggcgacagtgctaaccactgagccaccgtgccgtccTGTGATCGAAGACAACAGTGAagacaaactgcaaaaaaaaaaaacacacattgaaATAACTGCAATAGAGgcatgtgtggtgtgtgtgtgtgtgtgtgtgtgtataactgtACAATGGGATTTCAGTAATGTGAGTTAACAGCCCAGCATAGTATGGCAGCTGCTGTGTCTGAAGGCGTGGTACTCCATGACAGCCGCTGGCAGAAAGGATTCCTAAAGGTTTACTATGAGGCCTTAGTTCATGTCTGTTTTTTCTGTAATAATCAGACCAGCATTTTATTAATCTTCATCGGTCCgagttaaaaaataacattttgtgtATTTGCACTTGGTGGAAATACAATATGAATCAAAACTTGTTCCAAAAGATTAAatattaaacagttaaatggCAAATGTTGGTGTTGGCGTTTTCATTATTTATTGTACAGATTTCAAAAAGAATTCATTGtatttaaccccccccccccccctttttttttaaattagtattttaagaCTTTACAtgcatttctgttttaaataaattcaaatattcATATTTTCTACTTATCAATTCAGAAGTCAAATAAAACATGCACTATACATCCAGTTGTTATTTATACACACATGCAAGATTACAGCAATTAAGGGATTATAGTAAAGATTTTGTATAAAGTTTATGTTCATTCAACATTAAAACTTGGATATCAATTGTTTTCATTAAATTACGACAGATACATTTATAACTGATCATGTCCAATTTCTGAGTAAACAGATACTTACAACAACTCTAATATGACGTCAAGTTTGCTCTGATTCTCCAAATTTTACCAAAATTACACAAGTTGCAATTACACAAGTGGTTCTCAATTCCTGTCATGGGGCCCCCCTGTCCTCTCATTTTGTATGtgtcttatgcctagttcagactgtgtgatttttgccccgattttggctcgccgacaggttttgagaaatcgccgacaaatgcctgaaatcacaggcaaatcgctgctcgtgcacgtgagtgacaatcacacagtgacACAAGTATCAGTTCATGGATCTCTTAGTTaacgagctgatgatctgaatcaggtgtgttaagtaAGCCTGAGGActggaattgagaaccactgcattagtgtaaaaagaaataaaacatgaaCTACAATCAGTGGACTTTATTTTCTGAGGTAAATATACTTGTGTTCATTAGAATAGCAAGTTACTGTGCTCTTCTGTCAGCTGTCATTCTGACTGTCATCACCTGTGTGGggaaggttactttggaaatgtaatagattacagattacaaattactctatttaaaatgtaataagttacactactttttgattactttataaaagtaactaattacatttgattactttttgattacttttaagtttctaatgaatattttcaactaaataattttcaagcatttatacagAGCAGGAGTGAGCTTACATTAGCTCTGTTTACTGTTGAAATCTCAAAAGCTTTCatcacttaaataaaattaattttattaatttaaatttaaagtagagccaccacaaaaccagaccttatcacaaaaacatgtttactgttgttacaaaataaaaattttagttAGTTGTGCAGGTGATTTAtgtggcatttgcaataaaaaaatacatctaatttttgcaattttcatttttatatcgAAGCcacttaaattcaattcaatcgcatattagtgatcaataaaactgccaatgaaacatatgaggcagaactgttcatttcaattatttactgtaactaatatgctgtaccaaacaggaataaattatagtacataacagcaaaaataaaaaaaatccaataaaaccaggtgttacacatttaaaacactattgatccgcgatctgtaaatgtagcttgAGTGGACACTACTGCActacttcactaataaaatagcttcgctactgtgaAAAGCTATTTCATTTTTAGTGACGCTACCGCCACTCTATAGAGTGtatactgagaaatgtagttaagctagctaCACTGTTAATGTGATAAGATCACTTTGGCCAGAGGAGTCTGCTGGTGCCCTGAAATTCACAAATCGATAACTTTGTGAGTCAAAACATATAATTGGAAATGAaagggtctgtttttatttctgtgcaCTCACGATAAcgacaaaaaacatttttgcttttataaaacaatgaaatgcTAGCTTACATACCTTCAGATGCTTCCTCATGGTTTTCAATGGCAAAGAGGACTAGACGTGGTGCGCCCATGacaattaatttgatttaacagtagggggacaataaatataaaatttcttataagcaattttttaaagattttttgaaggggacacaaataatacagccaaATTGTACTTATAAAGATATGTCCCAACAgttaaaatggttttattgttcATATTACAGCATGGAGACTACATTATAGTTAAtttcaaagtttttctcaggttcaatgacagcaaatttttcttcaaaactatttattgcattgtttgttgtgttgtttacagtcaacagactgactcctgaagcagaataatagcaggaaaagacattttcgatactcataataactaacttgtttacattacacttgttaaattgagagatcatattgtaaatcagtgagcctgtAAGGTTCATttgctaaacagccacaactcagaaaacataaaaaaaattgttcacccctaaaagaattgtcattatcccttcaataaagcacaacacccttacctgacactgtacatctgactgaccctgctctgcctgttcctcaatcatttctttctcctCTGCCTGTGATTGATATTGttacattagtattttcataagcactcattcttaaAGCCAAATAGCCTTAATATGTGAACTTTATGTACTTGTCGTTTAGTGCACTGAAAAATTATATTATGTCCATTTtccttttctctgtcattttatcattgaggtaaagttggttttatattcgcacattcagtctctcattaataatataaccTCAGAAGAGTATTCATTGGAAAttataaatagtaaaatcatattagcaaccaacaaccatcaaagtacagcattgtttacagtcaattaaatagtgaaTAGTAAATTAAATAGTAGTATATTGTTTACCTAAAGGTTCTATAAAGACGTTGTAActgatacaaaatacagcagccagagttttaatgaaattgaagATACGAGAACATACCACAACAGCATTAATAGaatagattttaagattcttttattagtttataagtcACTACACATGACACCTTCTTACTTTTCTGACtgcttattaaaatataatccaaaccgtttgctTTGCTCTTCTAGCGCTCAGCTTTTAGAATTTCATTCTGTAAATCTGATATGATCTGGCAGCACTTCTTTTAGTCACTATGGTGTAAAAATTTGCAATTGTCTCCCAAATAAAGTGAAAGAATACCCcagaatttatgtttttaaaaagcttgttaagaagcacctttttaaaattgcgtatgaatatAACAGTTTGTGAAGTTTATGCAATTTATGTATattgtgtatgtttatgtatatattatgtatggtgtgtgcatgtatgtaaagaatattgtgtgtgattgtgtagacGTATGCATATATGAGTGTACAGGTATGCTTTTATCTGAGtatatattttgctttatttgtctatacatttttttttattttgtttattttacaatgcctgtttgttgtttgtgaagtgctttgagttgcatgtatgtaggaaaagtgctatacaaataaaatttattatcattattattattactattattattattaatgttattttgaaGTCAAACTTACATGGGATTTCTgtttgaatattcaaagtaccatggtaaacaatgtatgaAGCATttactgaatgaatgtgcgaatataaaaccaactttaccttaatcaTTT

Function

symbol description
nes Predicted to enable intermediate filament binding activity. Acts upstream of or within embryonic camera-type eye development; negative regulation of apoptotic process; and nervous system development. Predicted to be located in intermediate filament. Is expressed in several structures, including adaxial cell; gut epithelium; nervous system; neural crest cell; and neuronal stem cell. Orthologous to human NES (nestin).

GO:

id name namespace
GO:0021545 cranial nerve development biological_process
GO:2000179 positive regulation of neural precursor cell proliferation biological_process
GO:0007275 multicellular organism development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0030844 positive regulation of intermediate filament depolymerization biological_process
GO:0007399 nervous system development biological_process
GO:0007420 brain development biological_process
GO:0005882 intermediate filament cellular_component
GO:0019215 intermediate filament binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-071119-2 Predicted to enable intermediate filament binding activity. Acts upstream of or within embryonic camera-type eye development; negative regulation of apoptotic process; and nervous system development. Predicted to be located in intermediate filament. Is expressed in several structures, including adaxial cell; gut epithelium; nervous system; neural crest cell; and neuronal stem cell. Orthologous to human NES (nestin).

Ensembl:

ensembl_id ENSDARG00000088805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019910 True 8377 mRNA 0.39 4 29043813 29057849

Neighbor

gene id symbol gene type direction distance location
XLOC_010003 gpatch4 coding upstream 13139 29025292 ~ 29030674 (+)
XLOC_010002 gon4l coding upstream 19044 28994709 ~ 29024769 (+)
XLOC_010001 si:dkey-239n17.6 coding upstream 52437 28903774 ~ 28991376 (+)
XLOC_010000 chtopb coding upstream 156654 28881235 ~ 28887159 (+)
XLOC_009999 zgc:171704 coding upstream 246948 28792158 ~ 28796865 (+)
XLOC_010005 NA coding downstream 153513 29211362 ~ 29230847 (+)
XLOC_010006 NA coding downstream 188031 29245880 ~ 29250848 (+)
XLOC_010007 hapln2 coding downstream 246122 29303971 ~ 29308947 (+)
XLOC_010008 rrnad1 coding downstream 318902 29376751 ~ 29384935 (+)
XLOC_010009 ctsk coding downstream 434900 29492749 ~ 29502787 (+)
XLOC_009994 NA non-coding upstream 376480 28660395 ~ 28667333 (+)
XLOC_009989 CR936250.1 non-coding upstream 655650 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 672483 28270015 ~ 28371330 (+)
XLOC_009986 NA non-coding upstream 993785 28049554 ~ 28050028 (+)
XLOC_009984 NA non-coding upstream 1170446 27839927 ~ 27873367 (+)
XLOC_010014 NA non-coding downstream 533270 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 663778 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 845795 29903644 ~ 29908970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_07695223_07701346 NA coding CI01000027 null 7695046 ~ 7701823 (+)