G238520


Basic Information

Item Value
gene id G238520
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 1850049 ~ 1867893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU270631
CTTGATGAGCATAAGAGACATATATATATATATATATATCTCAATAAAGAGAGATATATAAATCTTTTATGCACATCTTTTGAATTCTAATAATATTTTACAATATTAGTTTTTATTGTACTTTTGAGCAAATAAATGCAGCCTTGATGATCATAAGAGACATATATATATATATATATATATAATATTTTTATTTCCTTGAGTGCATGTACCTGAGGGCCTGAGATGGTGACAGTGTCCTCAGCATTGTGACATGCAGGAACGACACCCTGTGGACATTGAGCTTTGCATTCTTCCCACGTTAGGCCTAAAGGGGGGATATGATGGGAGGGTTGGTAAAAGGAACCATTTAGCTTGCTAAAAAAAAAAAATCTACAGCATACATTGCTGAACAAAAGACTAGGCAAATCCCCCATGGAGGGACGCTTTGGGCTGTGCGTCCGATTAATGAAGCAAAGCCTGTGGAGGAATCTGCTGCCACACTAACCCACTGCAGCCATGCCCCCCGGGGGCAGGTTGGCCTCTTTAATACAGCGTCCTCTCCAGTAAGCGGCTAGAACTGCCTCGCTGTGGCTCAGGGAGCCGTCGGCGTAACCACACGCCAGCTCTCCCACAGAGTGGCCCACGATCCCATCAGGCTGTAGACCCATCTTCTGCAACATGTCAATCTGGGCGACCTGGAAAATTGAAAGGAATGCATTCAGGTTAGAGAAAAATATTCAGCCATAAAACTGAACTACAAGACTAGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU270631 True 751 lncRNA 0.43 2 1850049 1867893

Neighbor

gene id symbol gene type direction distance location
CI01000055_01796139_01801260 MBTD1, MBTD1.L coding upstream 47863 1796139 ~ 1803517 (+)
CI01000055_01782542_01789268 TDRKH coding upstream 60590 1782030 ~ 1789459 (+)
CI01000055_01754128_01776546 TMEM94 coding upstream 73286 1754128 ~ 1776763 (+)
CI01000055_01729194_01746887 NA coding upstream 102320 1729194 ~ 1747729 (+)
CI01000055_01694900_01711518 LLGL2 coding upstream 138007 1694900 ~ 1712042 (+)
CI01000055_01897725_01900568 SLC16A3 coding downstream 28381 1896274 ~ 1900801 (+)
CI01000055_01936268_01937799 C1QTNF1 coding downstream 68375 1936268 ~ 1937842 (+)
CI01000055_01961331_01962015 NA coding downstream 93120 1961013 ~ 1962448 (+)
CI01000055_02038946_02039783 NA coding downstream 170836 2038729 ~ 2040178 (+)
CI01000055_02060775_02077202 NA coding downstream 192685 2060578 ~ 2077486 (+)
G238644 NA non-coding upstream 124886 1724963 ~ 1725163 (+)
G238636 NA non-coding upstream 183810 1665944 ~ 1666239 (+)
G238625 NA non-coding upstream 259341 1589710 ~ 1590708 (+)
G238621 NA non-coding upstream 267417 1582400 ~ 1582632 (+)
G238615 NA non-coding upstream 273467 1576341 ~ 1576582 (+)
G238507 NA non-coding downstream 1061 1868954 ~ 1877532 (+)
G238651 NA non-coding downstream 49795 1917688 ~ 1917915 (+)
G238658 NA non-coding downstream 87831 1955724 ~ 1955943 (+)
G238659 NA non-coding downstream 88709 1956602 ~ 1956987 (+)
G238660 NA non-coding downstream 89243 1957136 ~ 1957450 (+)
G238534 NA other upstream 180805 1668410 ~ 1669244 (+)
G237840 NA other upstream 1430117 418925 ~ 419932 (+)
G237680 NA other upstream 1828887 20902 ~ 21162 (+)
CI01000055_02542526_02542861 NA other downstream 673229 2542216 ~ 2544118 (+)
G239761 NA other downstream 2294357 4162250 ~ 4213402 (+)
G239755 NA other downstream 2386317 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 2396134 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 3297599 5162990 ~ 5166647 (+)

Expression


Co-expression Network