G238660


Basic Information

Item Value
gene id G238660
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 1957136 ~ 1957450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU270779
CCGGTGTAATGAGGGAATGACAAAGTACCGAACCATGGGATCAATGTTGGAGGTGGAAAGCTGTTCGTTAGCGTAGGTATGTGAACGTCTTTGTGCTGTTTTGTAGGGTGCGAAGGGGATCGATGGTGCGTTTGCTTTGTGTAGGTAAATGATCATTGTGGAGATGGACAGGACCACTTTGTCTTGTGGTCCTAGGGGAACAAAAGACAAATTGGGCTAGAACTCCCATCATCCCTTTCACTCTCAATTCTACAACTTAACACTGGCAGTGATACATACGGAGAAGCTTCAATGACAAACTGGGTCAAATATTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270779 True 315 lncRNA 0.45 1 1957136 1957450

Neighbor

gene id symbol gene type direction distance location
CI01000055_01936268_01937799 C1QTNF1 coding upstream 19294 1936268 ~ 1937842 (+)
CI01000055_01897725_01900568 SLC16A3 coding upstream 56335 1896274 ~ 1900801 (+)
CI01000055_01848384_01850380 NA coding upstream 106408 1847964 ~ 1850728 (+)
CI01000055_01796139_01801260 MBTD1, MBTD1.L coding upstream 154950 1796139 ~ 1803517 (+)
CI01000055_01782542_01789268 TDRKH coding upstream 167677 1782030 ~ 1789459 (+)
CI01000055_01961331_01962015 NA coding downstream 3563 1961013 ~ 1962448 (+)
CI01000055_02038946_02039783 NA coding downstream 81279 2038729 ~ 2040178 (+)
CI01000055_02060775_02077202 NA coding downstream 103128 2060578 ~ 2077486 (+)
CI01000055_02152005_02168439 NA coding downstream 193941 2151391 ~ 2168459 (+)
CI01000055_02420414_02422942 NA coding downstream 462964 2420414 ~ 2423696 (+)
G238659 NA non-coding upstream 149 1956602 ~ 1956987 (+)
G238658 NA non-coding upstream 1193 1955724 ~ 1955943 (+)
G238651 NA non-coding upstream 39221 1917688 ~ 1917915 (+)
G238507 NA non-coding upstream 79604 1868954 ~ 1877532 (+)
G238520 NA non-coding upstream 89243 1850049 ~ 1867893 (+)
G238667 NA non-coding downstream 16178 1973628 ~ 1982052 (+)
G238673 NA non-coding downstream 34952 1992402 ~ 2366225 (+)
G238691 NA non-coding downstream 83785 2041235 ~ 2043160 (+)
G238754 NA non-coding downstream 259187 2216637 ~ 2228752 (+)
G238806 NA non-coding downstream 300019 2257469 ~ 2259939 (+)
G238534 NA other upstream 287892 1668410 ~ 1669244 (+)
G237840 NA other upstream 1537204 418925 ~ 419932 (+)
G237680 NA other upstream 1935974 20902 ~ 21162 (+)
CI01000055_02542526_02542861 NA other downstream 583672 2542216 ~ 2544118 (+)
G239761 NA other downstream 2204800 4162250 ~ 4213402 (+)
G239755 NA other downstream 2296760 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 2306577 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 3208042 5162990 ~ 5166647 (+)

Expression


Co-expression Network