XLOC_010006


Basic Information

Item Value
gene id XLOC_010006
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29245880 ~ 29250848 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021962
GCCCACCTTTCTTGTAGGTTATGGGCTTTTTAATCCATTTAGAATTGTTTATGTGAAATATTTTAAGTAACTTAATGTTTAGAAATTAttcgaaattatttaaaatcaattaggctattgttattgttgttgttattattaagaaAACAGACTACCACTAATTCACCATCTAATTTTTAAATAGTATTGAAATACATGTTAAAAAACTGAAGCAATTTCACAAACCAGAAATCTTTACGATGCAAGACTGGTCACAATTTTTAACTCATACATTATAATTTAATAGCCTAGACATCCATTTATTCAGGACAACTTATATTTAATGCTTTGTTAATTTTATAAACAGAGAAAAACATTACTGGGGAAAAATACAGAGGATGAAAAGGAAAGCAAAACACACTCTTCAATTGAGTTAATTAGTCAAAAGATGTCATTGTCAGGAAATCTACAAAAGAAATGGGTCAGTTTTCAGTATATATACAACATAGGAAACATATATTTACAGCCGTGGATAACTTCAAGTTCACAAATATGTTTCTGTTCTCGAGTTATTTAGAAATCCACGTCTGTCTGAACTACTTTATAACAACTAATTTGCAACGCCACAGAACCTTTAAATCCCGAAAGCTCCACAagaaataaagctataaaaaccCTATAGAACCTTTATATCTTCACATCATGTTTGTGACATCAAAGACTTGGAGCAGAGTGAGGCATCTAACGTTAGTGAAGCAAGAGCAGGAGAAACATTAGCCAGAGAAGTGGAGATAGCAAGATGATCCACCACAACGTCGAAGCGTGGGCTCGCCCATACACTCTTTTCCTGGTTTCATGTCAAACGAAGGATGGCTAATGAGAGACGACAAGCGACTGACGAAGGGACGAGTGGTAATTGGCATGGAGTCGTGGGAAACCATAAACAAACAGCTGCCAATGGCATTTTGTTTTTTCTCATCCCTTATAGCGGTGAAAAGAATCAGAAGCGGAGCTGCTCACTGGCAGCTGGGAGCGGAGCACGCACGAGAGGCCCAAATAACAAGCTTAGGGATTATATGGCGTGCCACTGGCATTACACATCACAGGATCACGACAACTCACGATTAAATATTCACTTTTCCGAATGATCACCGAGAAAAATCGGGGATTGTCCAGCATAACCGCTGCTTGTGAAAAATAGTTTTCACAGTGTCTCTCGGATGCCAATAATAGACTTGTCCATCAGCCTCTCCCTCCCTTGGAGTTAATTGGAGCTGCAGAGATTCAGACCAAGCTCTGAAGTTTGATTCATCATTGGATCACTAGATTATTAGATTAATCCTCCCCAAGATTCATGCCCCACCTGGACCCCCTTTACCCCCCTGCCAGGTCGTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021962 True 1375 lncRNA 0.39 2 29245880 29250848

Neighbor

gene id symbol gene type direction distance location
XLOC_010005 NA coding upstream 15033 29211362 ~ 29230847 (+)
XLOC_010004 nes coding upstream 188031 29043813 ~ 29057849 (+)
XLOC_010003 gpatch4 coding upstream 215206 29025292 ~ 29030674 (+)
XLOC_010002 gon4l coding upstream 221111 28994709 ~ 29024769 (+)
XLOC_010001 si:dkey-239n17.6 coding upstream 254504 28903774 ~ 28991376 (+)
XLOC_010007 hapln2 coding downstream 53123 29303971 ~ 29308947 (+)
XLOC_010008 rrnad1 coding downstream 125903 29376751 ~ 29384935 (+)
XLOC_010009 ctsk coding downstream 241901 29492749 ~ 29502787 (+)
XLOC_010010 ctss2.1 coding downstream 258285 29509133 ~ 29513434 (+)
XLOC_010011 ctss2.2 coding downstream 263625 29514473 ~ 29519977 (+)
XLOC_009994 NA non-coding upstream 578547 28660395 ~ 28667333 (+)
XLOC_009989 CR936250.1 non-coding upstream 857717 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 874550 28270015 ~ 28371330 (+)
XLOC_009986 NA non-coding upstream 1195852 28049554 ~ 28050028 (+)
XLOC_010014 NA non-coding downstream 340271 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 470779 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 652796 29903644 ~ 29908970 (+)
XLOC_010021 FP103008.1 non-coding downstream 829695 30080543 ~ 30080661 (+)
XLOC_010024 NA non-coding downstream 1079015 30329863 ~ 30330881 (+)

Expression


Co-expression Network