G238691


Basic Information

Item Value
gene id G238691
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2041235 ~ 2043160 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU270813
CAGAGAACACGTCAGGTGATTGATCATGAATATTAGCCACAATTTGCTTTGATTTGCCTCACAATGAGCTCCGGCGGGAAATGGTTGGTTAGACACAGCAGTTATAAACAGTTTGATCTTTAGGTCATGTGCTCAATCAAACACAATGAGTGAAATTAGCGGTCTATGAGCTTAAAAACAAAGAGTGTTGATGGGTAGATAAGCGGCGGGGTCTCTAAGTTTGTGTATGTGTGTATATGTAGATGGGTCTCAGTGTCAGCGCCAAAGCAGATGGCGCATCTTCTCTTATGCGCCTCTGAGAGATGCGGTCAGTACCGTGTCAGACTGCAAACCACTATCTGTGTGTGTGTGTCCTCCTAAAGGCCGGAGTCTATACCTCGAAGGGTCCCAGGCGCGTGAGCCGGTCGGACCCCAAGGGAGATAAGGTTTCTGCCTCAGACCAGGAGTGCTGGCAGGGCAGTTACAGAGCCCCTAGTGCTCCCCTGTCCTGTTGAATCATTGATGGATTGAGTCAGCATTCCCTATATACACACACACACACACATCCATCCTGAGAAACACACACACACTCACAGTGGAGTATAACCCCAATCTTTCCCTCACTTTGGAGGTGGCTTTTGTTAAAATTCAAGTACCATTCGGGGACTCATGGGAGACATTCTCCCCCAGGAAGGCGGTTCAACGAAATCAACACAAAGCATCGACACTCAGAAACCGTCCAGTTAAGATTGAGGCTTATTCTCTTCACTCCTCCCTCCCTCTTTCTCTCTTCAGCAGGCTTCTGGAATCACAGAGCAGCCGGTCAATAAACCCAGATGGTCAAGCCCCAGGATAGGGTGCAGCCTGGCCTGCCAGCACCACCCCCGCCACACACACACACACACTTATATACACACACATACCAGCTCAATCCATTGAGAAGGTGAGATCATCCTCAAAGAAGATCTCAAGGTCGGGTACGTGTGTTGTATGTTTACTTAATGTTTATCTTTGTTTAGGAGGGTGGTGTCGGGAGTATCCCAGCATGCCGCTCTCCAGGATTTGGGCATATCCTGAAAATACACACACACACACACAGGTACAGAGACAAGGGACTCCATTGCTTCTTGACAAGCAGCCAACAAGCCCTCATGTCCTCCTATGTGTGGAAAGCGCAGACGGAGAATGATGAAGGGACTTAGCCGTCTTATTATACTCTTGATGCAAGAAAATGCCGCCAACATCTAAGATTCAACAATCTGTGGAGGGCAATTAAGGATCTCTGTGGAGGAAAATATCTGATGAATACACTACATGGCCAAGATGAATAGGTTTGGCTATGGTGATTAATTCCAGCAAAGACTAAATTTGATGCTAGACATTCTAGAGATTTGTGTGCATCCAAGTTTGTAAGAAGGGTTCTTTTATTTTCCAGCCTCACAATGCCCCTGCACACTAAGCGAGGTCCATAAAAAAATTATTTACTATGTCTGGAATGGAAGAACTCGACTGGCCTGAACAAAACCAGATCTGAACACCTCTGAGATGAGTTTTAACACCTGAGATCATCTGCCAACATCAGTACCTCACCTCACCAATGTTCTTTCATCTCAATATGAGAAAATCCCTGAATCCATGTTCCAATATTTAGTGGAAAGCCTTTCCAAAAGAGTGTTACTTCCTGAATTCCCTAATTAATGTCTTTGAAATTAAATGCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270813 True 1700 lncRNA 0.46 2 2041235 2043160

Neighbor

gene id symbol gene type direction distance location
CI01000055_02038946_02039783 NA coding upstream 1057 2038729 ~ 2040178 (+)
CI01000055_01961331_01962015 NA coding upstream 78787 1961013 ~ 1962448 (+)
CI01000055_01936268_01937799 C1QTNF1 coding upstream 103393 1936268 ~ 1937842 (+)
CI01000055_01897725_01900568 SLC16A3 coding upstream 140434 1896274 ~ 1900801 (+)
CI01000055_01848384_01850380 NA coding upstream 190507 1847964 ~ 1850728 (+)
CI01000055_02060775_02077202 NA coding downstream 17418 2060578 ~ 2077486 (+)
CI01000055_02152005_02168439 NA coding downstream 108231 2151391 ~ 2168459 (+)
CI01000055_02420414_02422942 NA coding downstream 377254 2420414 ~ 2423696 (+)
CI01000055_02425304_02429638 ENPP7.1, ENPP7.2 coding downstream 382144 2425304 ~ 2429719 (+)
CI01000055_02542526_02542861 NA coding downstream 499056 2542216 ~ 2544118 (+)
G238667 NA non-coding upstream 59183 1973628 ~ 1982052 (+)
G238660 NA non-coding upstream 83785 1957136 ~ 1957450 (+)
G238659 NA non-coding upstream 84248 1956602 ~ 1956987 (+)
G238658 NA non-coding upstream 85292 1955724 ~ 1955943 (+)
G238651 NA non-coding upstream 123320 1917688 ~ 1917915 (+)
G238754 NA non-coding downstream 173477 2216637 ~ 2228752 (+)
G238806 NA non-coding downstream 214309 2257469 ~ 2259939 (+)
G238825 NA non-coding downstream 261081 2304241 ~ 2306652 (+)
G238850 NA non-coding downstream 326889 2370049 ~ 2370365 (+)
G238862 NA non-coding downstream 359338 2402498 ~ 2403127 (+)
G238534 NA other upstream 371991 1668410 ~ 1669244 (+)
G237840 NA other upstream 1621303 418925 ~ 419932 (+)
G237680 NA other upstream 2020073 20902 ~ 21162 (+)
G239761 NA other downstream 2119090 4162250 ~ 4213402 (+)
G239755 NA other downstream 2211050 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 2220867 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 3122332 5162990 ~ 5166647 (+)

Expression


Co-expression Network