G238825


Basic Information

Item Value
gene id G238825
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2304241 ~ 2306652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU270950
TGTTGCTTTTAGTTTGGACAAACAAATTCTCATTGAAATGTTGTGTGGTTAGGACAATACTAATGCCACCTTTTTGGCCTCTAGGCAAGGAGAAATGAGATAAAGGTAAAAACTAAATTAACATGTCTGCTTTGACTGAAATTAGAAGACAGTGTCAATAATAGAGCCATAGAAATATGACTTTTGAAAAAAAAAAAAAAAATTGGGGTAAGCCGCATTATGGTGTAATGTCAAATCATTGATAAATAATTCAATTTCAAATAAAAAAATATGAATTAAAAAAAAAAAATCAAAAAAGACAAACTACCATAGTAAGCATAATTTAATAAATTAATACTGAGCCACTGAAGACTGAAAATTCAGATTTTCCATCACAGAAATAAATAACATTTTTAAATAGCTTAAAATAGAAAAGAGTAATTTAAAATGTAATAATATTCTACAATGTTACTGTTTTTCTACTCAAATAAATACAACATAATATGACCCCAAACGTTTGAACAGTAGTGTATATTTCCATCAGCCATTAGTGCTGACTTTAATGCCTGAGCTTAGCAAATCATGAGTGCAGGGCTGAGGAAAACTCCACCATATGGCCACAAGTGTGTCCACTTTAGCTCTATCCCAACTCTCAGCCACACATCTGGACAGCCTTCACCTCTAATTGCCACTAATGTCTGAACACAACATGCGACAAGAAGGAATTAGCCATAGAGAGAGCCAAGAAAAGGTTTTATATTCAAAATATTTAAACATAGTGAAATAATGTTCAACATTTTCTAATAGTACTTGTAACAGTAATATTATTTGTAAAAGTATTTCCTTCCTTTAGATGCAAAGCTCACCGTCACTATTACTTGGGTACTGACACAGCTTACCCCAAAGCATCAGATACACTTTACCCAATGGCTATCATTTTGGGAAAAATATACATGGCTAATCTATACCTAGATAATTTACCCGACTTTACACTAGTTATTCTTTAACAGTAAATTGTCTACATGGCATGTAAAATGACCATTATGTCAAAGCAAATTAAATATAAATATATTTTGGTACATGCCAAGTTTTACACACTTTTTTTTTCCATATGATGCACCATTTCTAAATACATAATGCGACAAAAAATAAAAAAGGGGCCCACTGACACATCTTACCCCACTCTCCCCCATAACTGACTGCCCTTTTGGTAAGTCCATCACTCACATGCTGGTGCCCTTAGGAGTCTTTCCTTTTTTTTTTTTTTTTCACTCTCATGGAGTTGCTGTGCCGTCCCTCATGCTGAGATTGGGAAATGAGCCTCCCTGTACCAATTTGTCCTGGCCTTTCAGTCCCCTGTCCCTGATAGACCACCTGCCCAGGGCCTCTCATTGCTCCCATGCAGGGGGTGGCAGTGCCCTCCATGGGCCCTAACCCCCAAACCCAGCTGCTTTAATGGCCGCCGCGTTGCCCTATCGTGCCAGGCATTGAAGCATGGCTCTGCTCCACCAGACGCCAACACTCTCTTGGAATGCTAATGACCTCTTCCATTCCCATCTTCCGTTCTACTCCAGACACGTGGCCAACCCTTCCCCCACAATCTGTTGTTTCCGTCAAGCACACATGCAAAAAATGACAGTTTGCAATAAAAGGTTTGTATTACTGGAATGAGCCTACAATAAACTTATTCAGGAAAATTATGAGATTCAGACAAACATTTCGAGAGGGTCTATTCACTGCGAGCAGCTTTTAGCTGGTCGTGCACTTGACTGTCGCACTGCGTGAGTTCAGTAGCTCAAGTGCACTTACAGACACTTCTCCCCACACCCCCTACCCAGCATACTCGGGCTGAATGAGAAACTAGCGTCCCCTTGGGCACATTCATTCCTAAGGTGACTGGAGCAAGTGGAGATTGGAGTCCGTATTTACTTAAAATGAGAACAGATTTAGAATGGGAGGGGAGGAAAACAGGAATTGCAGTCAGTTCCTAACATCCACTCTATACTAATTTAAGTGGCTCTTGATATTATTCAAAAAAGGTTCTCAAATGCTGAAGGTGTATTTGCCATTTGATGAAAGCAGACATCAAGCTCTGTGTTGTCCAATGGATACCTGCTAGCTAGCAAGAGCCCATAATAGACCGGTATCCCTATCCATTAGTTTCCTGATGCTTATACAGAAACAACCACTGCAATTGTGGGATCATACAAAACACGCTTTTGTTATGCATGTTCATACACTAAAAGCCTCTTCTTCTAATACAGAGATGATTTAATCAGAATTTCAAAACAAATTTGAATTAAATTATACAATGTAAGGCCTGTTACACCAAGTCTGACGTAACTAAACAATACAAAAAACAGACATTTTAACAAAAAAAAAAAATTATTTGCATACTGTTTTAGTAGCCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270950 True 2392 lncRNA 0.38 2 2304241 2306652

Neighbor

gene id symbol gene type direction distance location
CI01000055_02152005_02168439 NA coding upstream 135782 2151391 ~ 2168459 (+)
CI01000055_02060775_02077202 NA coding upstream 226755 2060578 ~ 2077486 (+)
CI01000055_02038946_02039783 NA coding upstream 264063 2038729 ~ 2040178 (+)
CI01000055_01961331_01962015 NA coding upstream 341793 1961013 ~ 1962448 (+)
CI01000055_01936268_01937799 C1QTNF1 coding upstream 366399 1936268 ~ 1937842 (+)
CI01000055_02420414_02422942 NA coding downstream 113762 2420414 ~ 2423696 (+)
CI01000055_02425304_02429638 ENPP7.1, ENPP7.2 coding downstream 118652 2425304 ~ 2429719 (+)
CI01000055_02542526_02542861 NA coding downstream 235564 2542216 ~ 2544118 (+)
CI01000055_02601849_02607123 NA coding downstream 294078 2600730 ~ 2607536 (+)
CI01000055_02608904_02621376 RAB40B.L, MGC114680, RAB40B coding downstream 302252 2608904 ~ 2621462 (+)
G238806 NA non-coding upstream 44302 2257469 ~ 2259939 (+)
G238754 NA non-coding upstream 75489 2216637 ~ 2228752 (+)
G238691 NA non-coding upstream 261081 2041235 ~ 2043160 (+)
G238667 NA non-coding upstream 322189 1973628 ~ 1982052 (+)
G238660 NA non-coding upstream 346791 1957136 ~ 1957450 (+)
G238850 NA non-coding downstream 63397 2370049 ~ 2370365 (+)
G238862 NA non-coding downstream 95846 2402498 ~ 2403127 (+)
G239114 NA non-coding downstream 134524 2441176 ~ 2442935 (+)
G239116 NA non-coding downstream 141666 2448318 ~ 2453971 (+)
G239117 NA non-coding downstream 149657 2456309 ~ 2462968 (+)
G238534 NA other upstream 634997 1668410 ~ 1669244 (+)
G237840 NA other upstream 1884309 418925 ~ 419932 (+)
G237680 NA other upstream 2283079 20902 ~ 21162 (+)
G239761 NA other downstream 1855598 4162250 ~ 4213402 (+)
G239755 NA other downstream 1947558 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 1957375 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 2858840 5162990 ~ 5166647 (+)

Expression


Co-expression Network