XLOC_010008 (rrnad1)


Basic Information

Item Value
gene id XLOC_010008
gene name rrnad1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29376751 ~ 29384935 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019914
ACTGCAAGCACGCGTGCTAGGGTGAccagatgtaaacacacaaaCCTCCCACGTTCCTTctaaattctttaattaaataacCGGAGTTTTGACGAACACAATGCTCGTGGCGACATTTTCAGAGCAAGAGCAGAAAGAACTAGCCGAGAAGCTCACATCGCTCCTGTCAACCTACAGGAGTTCTTCAGCGAGAGCTTGTGGGAGACTCTGCCGGTGAGCTGGCAGGAGGCCCTCGGTGATCTTACACCCCCGATGATCGCTGATCTGCTGCTGGATGACAAGATTAAGGACAGctACTCATCTGTTTGGCCTCTGTCTTTACTGGCACTGCGGACAGCAGCACATGCACTGACGTTTCCACGTACAACTCCAGGTGGGCACCAGCAGAACGCAGGTGTAGCAGCAGAGGAGTTTCAGTCCAACCACAGTCAGAGCTCTTTGTTAGGACACATTTTCCGTAAACATGTCAAGCCAAAGAAGCAGCATGAAATCCGCCGACTCGGCATGCTCGTCAAGGAGTTGTGTGATCAGGCTAACTGTAACTGTGTGGTTGATGTTGGGTCTGGACagGGTCATTTGACTCGCTTTCTGTCTTTTGGACTCGGTCTGCATGTCACCGGAATCGAGGCTGATCCTAACCTTGTTTCCATGGCTACCAAATTTGATAGACAGCTGCTACAGACACTCACCAAGGAGAATCAAAGTTCAGGAAAAGCTCACGTTCTGCGTTCTGAACCTGGACCTCCTCCTCGTCACGTGGTGGGCTGGGTGAACCCAAAGGCTTCATGGGACGTCTTCATTCAGCAGCTCGGTATGACAGCAACTGAAAGTGACAGTATTGGAGCAaccactgaaaaaaaacagcgaGTGGAGGATCTGCATCTGGAGCCGCTTTCATGCCAAACCAAAGCAGAGGACTTACAAAATACACTTCACTCTCAAAAAACTGCCTCTCAAACAAACACGTCCATTTTTCCATCAGGCACAGCAACCGAAATGCTTACCTGTAAAACCATACCCATTCCTAAACGTGATCCTGGTAGTTTTGTCCTAACAGGTCTTCATGCCTGCGGAGATCTTAGCGCCACACTTTTACGGCATTTCACCAACTGCCCTCATGTTAACGTCATCACATCTGTTGCTTGCTGTTATATGAAGATCTCCACCAAGGAGAACCCAAACCCTCCTGGAGTTTTCCAGCCACCGTTTTTCTCGGACATCACAACGGCAGATTTTTGTTCGGAATTTGGTTATCCAATGAGCAACTGGGTCCGTGGATTAACGGGACACCAGCTGTCCTATAAGGCCAGAGAAGGAGCATGTCATGCAATAGAGGAGTATCTCCAGCGGCTGAGAGAGGAGAGCACATTATTGCGCACACACTGCTATAGAGCCATCCTAGAAAACATCATCAGAGCCCACAGGCCTGATATCCGCAGACCGGGAGTTCAGACCGTGAAGAAAGCCCACATGCTGTCATTTTCAGaGTATGCTCGTCTGGCACTGCCACGGGTGGGTTTACCTGCTGATCTCCCATTTGATCCTGTCTGTGTGGATGCAATGCTTGCCCAGCAGGGTAAAGTAGTGGCGTATTTCAGCCTGGTTCTTCTGCTGGCACCGGTGGTGGAGACTCTAGTGTTACTGGACAGAATAATTTTTCTGCAGGAAAGAGGTTTTCAGAGTAAGCTCATCCCGCTCTTTGATGCTGCTTTTTCTCCACGAAACCTGGTTCTGGTGGCCGTCAAGTCTGAAGAAACACGAAGCTGATCTCAAAACCACATAAACTATACAGCAACGTATTATGAAGGAATTGCCCTCGAATGAACCCCTACACAAACTACAAGAAATTTAGGATGTGAAATTAGAGGTCTGATTTTCCAGAGAGATCCATTACTGGCTCATTGTTCAGTTATCTTTCCCCCTTCATGCATGATTTGACTTATTAGTCTTGATAGTTTAAATTGTTGCTCGTCTGAATATGTGGTTTCAGTAGTTTTGACATTTAAAGATTAATGACAGACAAATTGTATTGCTTAATTTCCCATTATCAGTCAGGAGTTATTGTACAAGCTTGTTTCTCTAATAAAATACTTTTCACCTCCActctaaaatacaattaatatataaTTGAAGGATTATTCAGTGTAAATGTTATCGTGCAGAGATGCCCAGACTAGGGCCTTAGGGCCAAAGTTGACCCATGGTAACCTGTGCGAGTTGGCCCACCATACAATCAGAGAAGTGATGGTGAGGGTTAGGGGTGAATGCTTTTAACTGAGATCGGCATTTCTGATAtaacatgacctttttaaatttgttttattgctgtgctacaaaaactaaaatgttttgattaaatcttgtaaataaatctgattttctaaaatgtaaatactcTGTCTACAGACAGAGAACAATGCAGAAAACATCAGTgaacaaatcaaggcaaaaacaggTGCAGCTAAACTTGTGTATTCGGCTTTGAAATCCACTCTGTTTTGAATGGGATTGCTTTTACAGTTATGAattcaataaacatttaaaaa
>TCONS_00019915
aCCTCCCACGTTCCTTctaaattctttaattaaataacCGGAGTTTTGACGAACACAATGCTCGTGGCGACATTTTCAGAGCAAGAGCAGAAAGAACTAGCCGAGAAGCTCACATCGCTCCTGTCAACCTACAGGCACATATCAGACTCCTACATAATAGAGTTCTTCAGCGAGAGCTTGTGGGAGACTCTGCCGGTGAGCTGGCAGGAGGCCCTCGGTGATCTTACACCCCCGATGATCGCTGATCTGCTGCTGGATGACAAGATTAAGGACAGGCGctACTCATCTGTTTGGCCTCTGTCTTTACTGGCACTGCGGACAGCAGCACATGCACTGACGTTTCCACGTACAACTCCAGGTGGGCACCAGCAGAACGCAGGTGTAGCAGCAGAGGAGTTTCAGTCCAACCACAGTCAGAGCTCTTTGTTAGGACACATTTTCCGTAAACATGTCAAGCCAAAGAAGCAGCATGAAATCCGCCGACTCGGCATGCTCGTCAAGGAGTTGTGTGATCAGGCTAACTGTAACTGTGTGGTTGATGTTGGGTCTGGACagGGTCATTTGACTCGCTTTCTGTCTTTTGGACTCGGTCTGCATGTCACCGGAATCGAGGCTGATCCTAACCTTGTTTCCATGGCTACCAAATTTGATAGACAGCTGCTACAGACACTCACCAAGGAGAATCAAAGTTCAGGAAAAGCTCACGTTCTGCGTTCTGAACCTGGACCTCCTCCTCGTCACGTGGTGGGCTGGGTGAACCCAAAGGCTTCATGGGACGTCTTCATTCAGCAGCTCGGTATGACAGCAACTGAAAGTGACAGTATTGGAGCAaccactgaaaaaaaacagcgaGTGGAGGATCTGCATCTGGAGCCGCTTTCATGCCAAACCAAAGCAGAGGACTTACAAAATACACTTCACTCTCAAAAAACTGCCTCTCAAACAAACACGTCCATTTTTCCATCAGGCACAGCAACCGAAATGCTTACCTGTAAAACCATACCCATTCCTAAACGTGATCCTGGTAGTTTTGTCCTAACAGGTCTTCATGCCTGCGGAGATCTTAGCGCCACACTTTTACGGCATTTCACCAACTGCCCTCATGTTAACGTCATCACATCTGTTGCTTGCTGTTATATGAAGATCTCCACCAAGGAGAACCCAAACCCTCCTGGAGTTTTCCAGCCACCGTTTTTCTCGGACATCACAACGGCAGATTTTTGTTCGGAATTTGGTTATCCAATGAGCAACTGGGTCCGTGGATTAACGGGACACCAGCTGTCCTATAAGGCCAGAGAAGGAGCATGTCATGCAATAGAGGAGTATCTCCAGCGGCTGAGAGAGGAGAGCACATTATTGCGCACACACTGCTATAGAGCCATCCTAGAAAACATCATCAGAGCCCACAGGCCTGATATCCGCAGACCGGGAGTTCAGACCGTGAAGAAAGCCCACATGCTGTCATTTTCAGagttagttacatttttttgtcacATTCGTAAGTATGCTCGTCTGGCACTGCCACGGGTGGGTTTACCTGCTGATCTCCCATTTGATCCTGTCTGTGTGGATGCAATGCTTGCCCAGCAGGGTAAAGTAGTGGCGTATTTCAGCCTGGTTCTTCTGCTGGCACCGGTGGTGGAGACTCTAGTGTTACTGGACAGAATAATTTTTCTGCAGGAAAGAGGTTTTCAGAGTAAGCTCATCCCGCTCTTTGATGCTGCTTTTTCTCCACGAAACCTGGTTCTGGTGGCCGTCAAGTCTGAAGAAACACGAAGCTGATCTCAAAACCACATAAACTATACAGCAACGTATTATGAAGGAATTGCCCTCGAATGAACCCCTACACAAACTACAAGAAATTTAGGATGTGAAATTAGAGGTCTGATTTTCCAGAGAGATCCATTACTGGCTCATTGTTCAGTTATCTTTCCCCCTTCATGCATGATTTGACTTATTAGTCTTGATAGTTTAAATTGTTGCTCGTCTGAATATGTGGTTTCAGTAGTTTTGACATTTAAAGATTAATGACAGACAAATTGTATTGCTTAATTTCCCATTATCAGTCAGGAGTTATTGTACAAGCTTGTTTCTCTAATAAAATACTTTTCACCTCCActctaaaatacaattaatatataaTTGAAGGATTATTCAGTGTAAATGTTATCGTGCAGAGATGCCCAGACTAGGGCCTTAGGGCCAAAGTTGACCCATGGTAACCTGTGCGAGTTGGCCCACCATACAATCAGAGAAGTGATGGTGAGGGTTAGGGGTGAATGCTTTTAACTGAGATCGGCATTTCTGATAtaacatgacctttttaaatttgttttattgctgtgctacaaaaactaaaatgttttgattaaatcttgtaaataaatctgattttctaaaatgtaaatactcTGTCTACAGACAGAGAACAATGCAGAAAACATCAGTgaacaaatcaaggcaaaaacaggTGCAGCTAAACTTGTGTATTCGGCTTTGAAATCCACTCTGTTTTGAATGGGATTGCTTTTACAGTTATGAattcaataaacattt
>TCONS_00019916
ctaaattctttaattaaataacCGGAGTTTTGACGAACACAATGCTCGTGGCGACATTTTCAGAGCAAGAGCAGAAAGAACTAGCCGAGAAGCTCACATCGCTCCTGTCAACCTACAGGCACATATCAGACTCCTACATAATAGAGTTCTTCAGCGAGAGCTTGTGGGAGACTCTGCCGGTGAGCTGGCAGGAGGCCCTCGGTGATCTTACACCCCCGATGATCGCTGATCTGCTGCTGGATGACAAGATTAAGGACAGGCGctACTCATCTGTTTGGCCTCTGTCTTTACTGGCACTGCGGACAGCAGCACATGCACTGACGTTTCCACGTACAACTCCAGGTGGGCACCAGCAGAACGCAGGTGTAGCAGCAGAGGAGTTTCAGTCCAACCACAGTCAGAGCTCTTTGTTAGGACACATTTTCCGTAAACATGTCAAGCCAAAGAAGCAGCATGAAATCCGCCGACTCGGCATGCTCGTCAAGGAGTTGTGTGATCAGGCTAACTGTAACTGTGTGGTTGATGTTGGGTCTGGACagGGTCATTTGACTCGCTTTCTGTCTTTTGGACTCGGTCTGCATGTCACCGGAATCGAGGCTGATCCTAACCTTGTTTCCATGGCTACCAAATTTGATAGACAGCTGCTACAGACACTCACCAAGGAGAATCAAAGTTCAGGAAAAGCTCACGTTCTGCGTTCTGAACCTGGACCTCCTCCTCGTCACGTGGTGGGCTGGGTGAACCCAAAGGCTTCATGGGACGTCTTCATTCAGCAGCTCGGTATGACAGCAACTGAAAGTGACAGTATTGGAGCAaccactgaaaaaaaacagcgaGTGGAGGATCTGCATCTGGAGCCGCTTTCATGCCAAACCAAAGCAGAGGACTTACAAAATACACTTCACTCTCAAAAAACTGCCTCTCAAACAAACACGTCCATTTTTCCATCAGGCACAGCAACCGAAATGCTTACCTGTAAAACCATACCCATTCCTAAACGTGATCCTGGTAGTTTTGTCCTAACAGGTCTTCATGCCTGCGGAGATCTTAGCGCCACACTTTTACGGCATTTCACCAACTGCCCTCATGTTAACGTCATCACATCTGTTGCTTGCTGTTATATGAAGATCTCCACCAAGGAGAACCCAAACCCTCCTGGAGTTTTCCAGCCACCGTTTTTCTCGGACATCACAACGGCAGATTTTTGTTCGGAATTTGGTTATCCAATGAGCAACTGGGTCCGTGGATTAACGGGACACCAGCTGTCCTATAAGGCCAGAGAAGGAGCATGTCATGCAATAGAGGAGTATCTCCAGCGGCTGAGAGAGGAGAGCACATTATTGCGCACACACTGCTATAGAGCCATCCTAGAAAACATCATCAGAGCCCACAGGCCTGATATCCGCAGACCGGGAGTTCAGACCGTGAAGAAAGCCCACATGCTGTCATTTTCAGaGTATGCTCGTCTGGCACTGCCACGGGTGGGTTTACCTGCTGATCTCCCATTTGATCCTGTCTGTGTGGATGCAATGCTTGCCCAGCAGGGTAAAGTAGTGGCGTATTTCAGCCTGGTTCTTCTGCTGGCACCGGTGGTGGAGACTCTAGTGTTACTGGACAGAATAATTTTTCTGCAGGAAAGAGGTTTTCAGAGTAAGCTCATCCCGCTCTTTGATGCTGCTTTTTCTCCACGAAACCTGGTTCTGGTGGCCGTCAAGTCTGAAGAAACACGAAGCTGATCTCAAAACCACATAAACTATACAGCAACGTATTATGAAGGAATTGCCCTCGAATGAACCCCTACACAAACTACAAGAAATTTAGGATGTGAAATTAGAGGTCTGATTTTCCAGAGAGATCCATTACTGGCTCATTGTTCAGTTATCTTTCCCCCTTCATGCATGATTTGACTTATTAGTCTTGATAGTTTAAATTGTTGCTCGTCTGAATATGTGGTTTCAGTAGTTTTGACATTTAAAGATTAATGACAGACAAATTGTATTGCTTAATTTCCCATTATCAGTCAGGAGTTATTGTACAAGCTTGTTTCTCTAATAAAATACTTTTCACCTCCActctaaaatacaa

Function

symbol description
rrnad1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human METTL25B (methyltransferase like 25B).

GO:

id name namespace
GO:0000154 rRNA modification biological_process
GO:0005575 cellular_component cellular_component
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-515 Predicted to enable rRNA (adenine-N6,N6-)-dimethyltransferase activity. Predicted to act upstream of or within rRNA modification. Orthologous to human METTL25B (methyltransferase like 25B).

Ensembl:

ensembl_id ENSDARG00000089033

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019914 False 2546 mRNA 0.45 8 29376751 29384935
TCONS_00019915 False 2556 mRNA 0.45 8 29376794 29384930
TCONS_00019916 True 2085 mRNA 0.47 8 29376810 29384505

Neighbor

gene id symbol gene type direction distance location
XLOC_010007 hapln2 coding upstream 67804 29303971 ~ 29308947 (+)
XLOC_010006 NA coding upstream 125903 29245880 ~ 29250848 (+)
XLOC_010005 NA coding upstream 145904 29211362 ~ 29230847 (+)
XLOC_010004 nes coding upstream 318902 29043813 ~ 29057849 (+)
XLOC_010003 gpatch4 coding upstream 346077 29025292 ~ 29030674 (+)
XLOC_010009 ctsk coding downstream 107814 29492749 ~ 29502787 (+)
XLOC_010010 ctss2.1 coding downstream 124198 29509133 ~ 29513434 (+)
XLOC_010011 ctss2.2 coding downstream 129538 29514473 ~ 29519977 (+)
XLOC_010012 ensab coding downstream 170866 29555801 ~ 29577708 (+)
XLOC_010013 mcl1b coding downstream 201069 29586004 ~ 29587969 (+)
XLOC_009994 NA non-coding upstream 709418 28660395 ~ 28667333 (+)
XLOC_009989 CR936250.1 non-coding upstream 988588 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 1005421 28270015 ~ 28371330 (+)
XLOC_010014 NA non-coding downstream 206184 29591119 ~ 29600668 (+)
XLOC_010018 NA non-coding downstream 336692 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 518709 29903644 ~ 29908970 (+)
XLOC_010021 FP103008.1 non-coding downstream 695608 30080543 ~ 30080661 (+)
XLOC_010024 NA non-coding downstream 944928 30329863 ~ 30330881 (+)

Expression


Co-expression Network