G239117


Basic Information

Item Value
gene id G239117
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2456309 ~ 2462968 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU271292
AGCATTTACCAATTGTGGGCTTTCGTCTCCTCATTTCTGGAGAGGGCGAGGGAGTGGGCACGTAGTCTGTGTTAGAGGACGTGGAGTCATTCTTCTGGACAGGAGGCTCCACGCTGACATCTACTAGCCAGATGATAGGCACCCAACCGAGAGGCTGTTTATAGCGGGCGTACTGCAGGGCATTAGTGATCCAGCGGACGTCTCGCCACATCTCGTCCAATTGCTGAATGTAGTCCAATATGTGCTGTTGTCTCTGTTTGGCTGTGGACACCTCTGAGTCAGTGATGGCCTCTCTGAAAGCCTGCTGGGTAATTAGACCGTCCAGGTCCAGCACAGAGGACAGCCGGCAATAAAGACTGATAAATTTCTCTTTATATGAGCAGAAGTGAACGAGCTCAAACATTTGAAGAGGGAGGTTGAGGAACCCCGAGTGTGGTGTGTAGGGGTTGGTCTGTCCCGGGGCAGAGCAAACGTCGTCTGAGGCGGGCAGCAGCAGAAGAAAGGACACATTGTGACCCAGCTCCAGCACCTCGTGTGTGTAGAGACGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU271292 True 549 lncRNA 0.53 3 2456309 2462968

Neighbor

gene id symbol gene type direction distance location
CI01000055_02425304_02429638 ENPP7.1, ENPP7.2 coding upstream 26590 2425304 ~ 2429719 (+)
CI01000055_02420414_02422942 NA coding upstream 32613 2420414 ~ 2423696 (+)
CI01000055_02152005_02168439 NA coding upstream 287850 2151391 ~ 2168459 (+)
CI01000055_02060775_02077202 NA coding upstream 378823 2060578 ~ 2077486 (+)
CI01000055_02038946_02039783 NA coding upstream 416131 2038729 ~ 2040178 (+)
CI01000055_02542526_02542861 NA coding downstream 79248 2542216 ~ 2544118 (+)
CI01000055_02601849_02607123 NA coding downstream 137762 2600730 ~ 2607536 (+)
CI01000055_02608904_02621376 RAB40B.L, MGC114680, RAB40B coding downstream 145936 2608904 ~ 2621462 (+)
CI01000055_02646852_02680018 GRIN2C coding downstream 181382 2644350 ~ 2680037 (+)
CI01000055_02729512_02734190 NAT9 coding downstream 266544 2729512 ~ 2734772 (+)
G239116 NA non-coding upstream 2338 2448318 ~ 2453971 (+)
G239114 NA non-coding upstream 13374 2441176 ~ 2442935 (+)
G238862 NA non-coding upstream 53182 2402498 ~ 2403127 (+)
G238850 NA non-coding upstream 85944 2370049 ~ 2370365 (+)
G238825 NA non-coding upstream 149657 2304241 ~ 2306652 (+)
G239178 NA non-coding downstream 87800 2550768 ~ 2551066 (+)
G239180 NA non-coding downstream 96004 2558972 ~ 2560176 (+)
G239185 NA non-coding downstream 100662 2563630 ~ 2564524 (+)
G239228 NA non-coding downstream 254149 2717117 ~ 2717394 (+)
G238534 NA other upstream 787065 1668410 ~ 1669244 (+)
G237840 NA other upstream 2036377 418925 ~ 419932 (+)
G237680 NA other upstream 2435147 20902 ~ 21162 (+)
G239761 NA other downstream 1699282 4162250 ~ 4213402 (+)
G239755 NA other downstream 1791242 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 1801059 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 2702524 5162990 ~ 5166647 (+)

Expression


Co-expression Network