G240746


Basic Information

Item Value
gene id G240746
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 2891415 ~ 2892637 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU273215
CATAACCCATCTCTGCATCCTCTGTGTCTATCTCTTCTTCCTCTGGATGCTTGGAGGACATCTTTGATTTTACATTTTCATCTCCATCTTCTTCATCTTCATCCTCATCCTCATCATCTTCCTCTGAGCAGAGACCAGAGTCTGGACCTGAGCTTTTTTTTGCAGGCTCCCCTTTTTCCATCTCCTCATCATCCTCATCATCATCTTCTTCACTTTCATCTTCTTCAGTTTCCTCTCCTTCACTCTTTTCCAGTTCATCATCACTATCAGCAAATGCAGGCATCTCTGCAAGCTCATCAACTTTCTGTTTCTTCACAGGAGGACCTGCCGCCTCCATTGATTTCTTATCTTGCTTTTTCAGTGTTGCCACCCCCTGTTCATTTTCCTCATCCTCTTCTTCTTCATCATCCTCCTCTTCATCACTCTCTTCCTCCTCTTCACTCTCTTCCTCCTCATCACCATCATCATCATCATCATCATCATCTTCCTCATCTTGATCAGCAAAGACAGCTCTCCTCCTCTCTCTCTGTGCTTTTTCATCCCATTCAAGGCTTTCCATAGGGTTTTGTTTCAATAAGAGACTGAACGAGTTCAGTGGTGGGCCGCACCTCCTCTGCTGCTGTTTGGCATGTCCAGAGGGCATATCGATGTAGACTGCATCCTTATCATACACCAATCCACCTACGCCGGCCATGGGGGCATACAATAATCGTTCCTTTACATTCAGTGCTCTCTTCTTAATCACCTCTGGAAGAGGGCATGGGTCTGGCAGGAAGCTAACATCCGCCACAGAGAAGTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU273215 True 801 lncRNA 0.46 3 2891415 2892637

Neighbor

gene id symbol gene type direction distance location
CI01000055_02872903_02877339 NA coding downstream 13984 2872689 ~ 2877431 (-)
CI01000055_02735304_02738366 LRRC59 coding downstream 153049 2735304 ~ 2738366 (-)
CI01000055_02629406_02631203 NA coding downstream 257972 2629381 ~ 2633443 (-)
CI01000055_02580665_02594550 STXBP4 coding downstream 296865 2580665 ~ 2594550 (-)
CI01000055_02555875_02560000 NA coding downstream 331066 2553708 ~ 2560349 (-)
CI01000055_02905189_02913362 SH2D4BB coding upstream 12363 2905000 ~ 2913550 (-)
CI01000055_02936803_03111716 NRG3, NRG3B coding upstream 44166 2936803 ~ 3111716 (-)
CI01000055_03242747_03342954 ATRNL1, ATRNL1B coding upstream 348588 3241225 ~ 3343374 (-)
CI01000055_03348848_03351995 TRUB1 coding upstream 455947 3348584 ~ 3352005 (-)
CI01000055_03367394_03368952 NA coding upstream 474688 3366054 ~ 3368991 (-)
G240751 NA non-coding downstream 47933 2843265 ~ 2843482 (-)
G240722 NA non-coding downstream 145755 2745338 ~ 2745660 (-)
G240718 NA non-coding downstream 162717 2728423 ~ 2728698 (-)
G240715 NA non-coding downstream 165859 2725341 ~ 2725556 (-)
G240682 NA non-coding downstream 207554 2683638 ~ 2683861 (-)
G240765 NA non-coding upstream 17440 2910077 ~ 2910306 (-)
G240705 NA non-coding upstream 99769 2992406 ~ 2994053 (-)
G240701 NA non-coding upstream 187479 3080116 ~ 3090869 (-)
G240779 NA non-coding upstream 220741 3113378 ~ 3113658 (-)
G240723 NA other downstream 142063 2748835 ~ 2749352 (-)
G238932 NA other downstream 572361 2311659 ~ 2319054 (-)
G238867 NA other downstream 1596892 1281108 ~ 1294523 (-)
G238481 NA other downstream 1626607 1263634 ~ 1264808 (-)
G238380 NA other downstream 1949062 941871 ~ 942353 (-)
G240825 NA other upstream 323537 3216174 ~ 3217594 (-)
CI01000055_03616564_03618430 NA other upstream 723709 3616555 ~ 3618430 (-)
G240975 NA other upstream 825014 3717651 ~ 3733995 (-)
CI01000055_03918168_03965674 TCF7L2 other upstream 1018665 3911302 ~ 3966460 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other upstream 1851069 4743706 ~ 4764067 (-)

Expression


Co-expression Network