XLOC_010011 (ctss2.2)


Basic Information

Item Value
gene id XLOC_010011
gene name ctss2.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29514473 ~ 29519977 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019921
aaagcaaCCAGGAACTCTAAGCCATTAATTCACCTCTACAGTCGACGTGCAAGTTCAGACCATGATGTTCGGGAGCTTGCTGTTTGCCGTGTGTTGTAGTGCAGCACTGGCCCATTTTAACACCAATCTAGACCAGCACTGGGAGCTGTGGAAGAAGAAACATGTCAAGCTTTACTCCTGTGAGGATGAGGAAGTAGGCAGGAGGGAATTGTGGGAGAGAAACCTTGAACTGATCGCCATCCACAACCTAGAGGCCTCCATGGGCATGCATTCATATGACTTAGCCATAAACCACATGGCTGACATGACGACAGAGGAGATTTTGCAGACATTAGCCGTCACTCGTGTTCCTCCTGGCTTCAAGAGGCCAACAGCAGAATATGTGAGCTCTTCTTTTGCTGTTGTCCCAGATACACTGGACTGGAGAGATAAGGGCTATGTGACTAGTGTGAAAAACCAGGGTGCTTGTGGTTCTTGTTGGGCATTCAGCTCTGTTGGGGCTCTTGAAGGTCAGCTGATGAAGACCACAGGAAAGCTGGTGGACCTCAGTCCTCAAAACCTGGTGGACTGTTCTTCTAAATATGGCAACCTTGGCTGCAATGGCGGGTATATGTCTCAAGCCTTCCAATATGTTATTGATAATGGCGGCATTGATTCAGAGTCCTCTTACCCTTATCAAGGAACGCAAGGATCGTGTAGATATGACCCATCCCAGCGTGCAGCAAACTGTACTTCTTACAAATTCGTTAGTCAGGGAGATGAGCAGGCCCTAAAAGAGGCTTTGGCCAACATCGGGCCCGTTTCAGTGGCCATCGACGCCACCCGCCCTCAGTTTATCTTTTACCGCAGTGGGGTTTACGATGATCCATCCTGCACACAAAAGGTAAACCATGGAGTGCTTGCTGTGGGATATGGTACACTTTCAGGACAGGACTATTGGCTGGTCAAAAACAGTTGGGGTGCTGGATTTGGAGATGGTGGCTACATCCGTATAGCCAGAAACAAGAATAACATGTGTGGCATCGCCTCAGAAGCCTGCTATCCAATTGTATAACTGAAAAACTAttgaaatatatgaatatatggaAATAAGAAATTTACCATATTATAATCCAGTTTCTTAGCTGTacatgtatgttttgtttttccatttctattgtttttattcaaattgaATATTGTATAATTAGTTTTAattcttgtcttttttttgtctagtaaaatattaaaggaaatatgGTTCCACTCTGTTCAGTATGTTTACAAA
>TCONS_00019922
ATTAATTCACCTCTACAGTCGACGTGCAAGTTCAGACCATGATGTTCGGGAGCTTGCTGTTTGCCGTGTGTTGTAGTGCAGCACTGGCCCATTTTAACACCAATCTAGACCAGCACTGGGAGCTGTGGAAGAAGAAACATGTCAAGCTTTACTCCTGTGAGGATGAGGAAGTAGGCAGGAGGGAATTGTGGGAGAGAAACCTTGAACTGATCGCCATCCACAACCTAGAGGCCTCCATGGGCATGCATTCATATGACTTAGCCATAAACCACATGGCTGACATGACGACAGAGGAGATTTTGCAGACATTAGCCGTCACTCGTGTTCCTCCTGGCTTCAAGAGGCCAACAGCAGAATATGTGAGCTCTTCTTTTGCTGTTGTCCCAGATACACTGGACTGGAGAGATAAGGGCTATGTGACTAGTGTGAAAAACCAGGTATTGTATTACATAGATTGATATATTTTGACAATCTGATAATTGTTCAGCCTTTCGTTCAGTAATATAACTCGATTGTGTTTCTTTATGTTGACAAACTTTTTTGATATTTCTTGATAAGCCATCGTGAAATAGAAAGTGTTGCTCCATGCCTAAATAATTTGTTTGGATGTTTCAT
>TCONS_00019923
ACCATGATGTTCGGGAGCTTGCTGTTTGCCGTGTGTTGTAGTGCAGCACTGGCCCATTTTAACACCAATCTAGACCAGCACTGGGAGCTGTGGAAGAAGAAACATGTCAAGCTTTACTCCTGTGAGGATGAGGAAGTAGGCAGGAGGGAATTGTGGGAGAGAAACCTTGAACTGATCGCCATCCACAACCTAGAGGCCTCCATGGGCATGCATTCATATGACTTAGCCATAAACCACATGGCTGACATGACGACAGAGGAGATTTTGCAGACATTAGCCGTCACTCGTGTTCCTCCTGGCTTCAAGAGGCCAACAGCAGAATATGTGAGCTCTTCTTTTGCTGTTGTCCCAGATACACTGGACTGGAGAGATAAGGGCTATGTGACTAGTGTGAAAAACCAGGGTGCTTGTGGTTCTTGTTGGGCATTCAGCTCTGTTGGGGCTCTTGAAGGTCAGCTGATGAAGACCACAGGAAAGCTGGTGGACCTCAGTCCTCAAAACCTGGTGGACTGTTCTTCTAAATATGGCAACCTTGGCTGCAATGGCGGGTATATGTCTCAAGCCTTCCAATATGTTATTGATAATGGCGGCATTGATTCAGAGTCCTCTTACCCTTATCAAGGAACGCAAGGATCGTGTAGATATGACCCATCCCAGCGTGCAGCAAACTGTACTTCTTACAAATTCGTTAGTCAGGGAGATGAGCAGGCCCTAAAAGAGGCTTTGGCCAACATCGGGCCCGTTTCAGTGGCCATCGACGCCACCCGCCCTCAGTTTATCTTTTACCGCAGTGGGGTTTACGATGATCCATCCTGCACACAAAAGGTAAACCATGGAGTGCTTGCTGTGGGATATGGTACACTTTCAGGACAGGACTATTGGCTGGTCAAAAACAGTTGGGGTGCTGGATTTGGAGATGGTGGCTACATCCGTATAGCCAGAAACAAGAATAACATGTGTGGCATCGCCTCAGAAGCCTGCTATCCAATTGTATAACT

Function

symbol description
ctss2.2 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Is expressed in blood; macrophage; and yolk syncytial layer. Human ortholog(s) of this gene implicated in neuropathy. Orthologous to human CTSS (cathepsin S).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050626-55 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Is expressed in blood; macrophage; and yolk syncytial layer. Human ortholog(s) of this gene implicated in neuropathy. Orthologous to human CTSS (cathepsin S).

Ensembl:

ensembl_id ENSDARG00000013771

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019921 False 1267 mRNA 0.44 8 29514473 29519977
TCONS_00019922 False 615 lncRNA 0.43 4 29514496 29517538
TCONS_00019923 True 998 mRNA 0.49 7 29516098 29519766

Neighbor

gene id symbol gene type direction distance location
XLOC_010010 ctss2.1 coding upstream 1039 29509133 ~ 29513434 (+)
XLOC_010009 ctsk coding upstream 11686 29492749 ~ 29502787 (+)
XLOC_010008 rrnad1 coding upstream 129538 29376751 ~ 29384935 (+)
XLOC_010007 hapln2 coding upstream 205526 29303971 ~ 29308947 (+)
XLOC_010006 NA coding upstream 263625 29245880 ~ 29250848 (+)
XLOC_010012 ensab coding downstream 35824 29555801 ~ 29577708 (+)
XLOC_010013 mcl1b coding downstream 66027 29586004 ~ 29587969 (+)
XLOC_010014 NA coding downstream 71142 29591119 ~ 29600668 (+)
XLOC_010015 vps72b coding downstream 110988 29630965 ~ 29647738 (+)
XLOC_010016 tmod4 coding downstream 130721 29650698 ~ 29684858 (+)
XLOC_010005 NA non-coding upstream 283626 29211362 ~ 29230847 (+)
XLOC_009994 NA non-coding upstream 847140 28660395 ~ 28667333 (+)
XLOC_009989 CR936250.1 non-coding upstream 1126310 28388046 ~ 28388163 (+)
XLOC_009987 NA non-coding upstream 1143143 28270015 ~ 28371330 (+)
XLOC_010018 NA non-coding downstream 201650 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 non-coding downstream 383667 29903644 ~ 29908970 (+)
XLOC_010021 FP103008.1 non-coding downstream 560566 30080543 ~ 30080661 (+)
XLOC_010024 NA non-coding downstream 809886 30329863 ~ 30330881 (+)

Expression


Co-expression Network