G240825


Basic Information

Item Value
gene id G240825
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3216174 ~ 3217594 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU273296
GAAAATTCTGTCATCATTTACTCTCATGTTGATCCAACATGTTCTGTTTAGTTGTTCATGTCTAGAGTTTGTTTTCCATTAGTCACATGTTCTCCTTTGTTCAGTGTTTCTGGCCACTCGTTTGTATCTTTGGTAACTGATTTGATTAGTGTTTGAGTTCAGGTGTGTCTTGTTAATTTGCTCCTCAGTTCTGTGTATTTAAGCCTTGTGTTTGTTCAGTTCAGTTGTCAGTTCTCTGTTACGCATATGTTGTTGTTCCGTTCCTGCACCCTGAGTTTCTGTTTTGGATTCTGTTAGAATAAAAGTACTGCTGTGTTTAGATCCTGCTTCCTACTTTGATTTCAACTGTGTGTGACAGAAGAACTGACCCTATTATGGATCTAGCAGCAGTGGAAATTCTCCTCCTCTCCTAAGGGGATCTGTCCCTCGAGGCCCACACACAGAGGTATTTGGATTTGGTTCCCTTTGTTCATTATGATGACACCAGCCTCTGTGTGTTTTTCCAGGCAGGTCTCAATGCTGAGACCAGAGCATGCCCGGAGATGGGCCTTGGGGAAGCTTCCAGAGTTATGTAGAGTGGGTGCTTGTCCACAATGGATCCCCCTTGACCATCGTGGAGAGTGAGGAGAAAACCAGCGTGCATGCCCCTGACCGTCGTCCAATGACGGCTCCAGCCCCTGACCACAGTCCAGTGATGGCTCCAGTCCCTTACCACAGTCCAGTGATGGCCCCGTTCCCTTCCAGAGAGGGCTGCCGTTCCCATCCCGAGTCCAGAGAGGACACCAGCCAAAAAGCCTGTTCCAGAGTCCGCTACAGCCCAGGAGCCCATCCAAGTGTCTGTTCCAGCCCAAGAATACGCACCAGCCCATAAACCCTTAGATCCTCCCAAGAAAATTTTGGGGGGGGGGTGCAGCAAGTCCTCTGCCGTAGTGGCCATGAAAGGCCCCCGGGTGAAGGCCACGGAGGCAGCGCTGCCATGGCCCCCTGAGTTGTGTTGTGTTCTGTTTAGTGATTCATGTCTAGAGTTTGTTTCCGTTAGTCACATGTTCTCCTTGGTTCAGTGTTTCCCACCACTTGTTTGTATCCTTGGTAACTGATTTGATTAGTGTTTGAGTTCAGGTGTGTCTTGTTAGTTTGCTCCTCAGTTCTGTGTNNNNNNNNNNNNNNNTTGTTCAGTTGTCAGTTCTGTTATGCATATGTTGTCATTCCGTTTCTGCACCCTGAGTTTCTGTTTTGGATTCTGTTAGAATAAAAGTACTGCTGCGTTTAGATCCTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU273296 True 1278 TUCP 0.47 4 3216174 3217594

Neighbor

gene id symbol gene type direction distance location
CI01000055_02936803_03111716 NRG3, NRG3B coding downstream 104458 2936803 ~ 3111716 (-)
CI01000055_02905189_02913362 SH2D4BB coding downstream 302624 2905000 ~ 2913550 (-)
CI01000055_02872903_02877339 NA coding downstream 338743 2872689 ~ 2877431 (-)
CI01000055_02735304_02738366 LRRC59 coding downstream 477808 2735304 ~ 2738366 (-)
CI01000055_02629406_02631203 NA coding downstream 582731 2629381 ~ 2633443 (-)
CI01000055_03242747_03342954 ATRNL1, ATRNL1B coding upstream 23631 3241225 ~ 3343374 (-)
CI01000055_03348848_03351995 TRUB1 coding upstream 130990 3348584 ~ 3352005 (-)
CI01000055_03367394_03368952 NA coding upstream 149731 3366054 ~ 3368991 (-)
CI01000055_03480523_03482073 NA coding upstream 262617 3480211 ~ 3482221 (-)
CI01000055_03498800_03512565 VWA2 coding upstream 280289 3497883 ~ 3512565 (-)
G240784 NA non-coding downstream 96894 3118532 ~ 3119280 (-)
G240782 NA non-coding downstream 100568 3115392 ~ 3115606 (-)
G240780 NA non-coding downstream 101741 3114005 ~ 3114433 (-)
G240779 NA non-coding downstream 102516 3113378 ~ 3113658 (-)
G240701 NA non-coding downstream 125305 3080116 ~ 3090869 (-)
G240833 NA non-coding upstream 9796 3227390 ~ 3227632 (-)
G240837 NA non-coding upstream 13935 3231529 ~ 3232186 (-)
G240839 NA non-coding upstream 16387 3233981 ~ 3234204 (-)
G240843 NA non-coding upstream 115876 3333470 ~ 3339470 (-)
G240851 NA non-coding upstream 136045 3353639 ~ 3356443 (-)
G240723 NA other downstream 466822 2748835 ~ 2749352 (-)
G238932 NA other downstream 897120 2311659 ~ 2319054 (-)
G238867 NA other downstream 1921651 1281108 ~ 1294523 (-)
G238481 NA other downstream 1951366 1263634 ~ 1264808 (-)
G238380 NA other downstream 2273821 941871 ~ 942353 (-)
CI01000055_03616564_03618430 NA other upstream 398752 3616555 ~ 3618430 (-)
G240975 NA other upstream 500057 3717651 ~ 3733995 (-)
CI01000055_03918168_03965674 TCF7L2 other upstream 693708 3911302 ~ 3966460 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other upstream 1526112 4743706 ~ 4764067 (-)
CI01000055_05338403_05341971 NA other upstream 2116691 5338403 ~ 5341971 (-)

Expression


Co-expression Network