G239535


Basic Information

Item Value
gene id G239535
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 3509117 ~ 3518130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU271771
GGATTTTCTTCATCTTTTTCTTCAGCTCCTCCTTGCCCTTGTAGGAGTCTAGACTGATTTCCAGTTTGGGTGTGGAACCAAACTGAACCACGCCAACTTTCACCTTGCCTGGGCTGACATCGAGAGCCTCACACAGCTTCAACATGTAGTGCCGGGATCGTTCGAATCCTCCTTTCCCAACACTGTAGGAGCTGTCCATCACAAAGAGAACATCCATCGCTGCAGAGCACTGCATCATTTCTCCAGCAGCGTTGATTTTCATAATGGTTTCAAGATCTGTTTGCATTTCCTGCACAGAGAAAATGGACCAAACTTGGCCAAACAGGAGCATGAGAAGGAGATGCAGCCGGCTTCTAGAGGACATTTTTTGAGCCCTCTCCGTTCTGTTCTCAGCGCAGGTACTGAAGTGTCAGAGTTTCTCTGGAGCTGTAACTCAGAGGCTCAGGTCGTGCTGAACAGGAGAGGGTGCTCTGCTCTTCTACTTCCGTACCGAGTCTGACTTCATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU271771 True 507 lncRNA 0.49 5 3509117 3518130

Neighbor

gene id symbol gene type direction distance location
CI01000055_03482922_03497329 AFAP1L2 coding upstream 11501 3482442 ~ 3497616 (+)
CI01000055_03471384_03476628 NA coding upstream 32262 3470754 ~ 3476855 (+)
CI01000055_03453919_03456503 NA coding upstream 52469 3453330 ~ 3456648 (+)
CI01000055_03392185_03445744 ABLIM1 coding upstream 62428 3392185 ~ 3446689 (+)
CI01000055_03194041_03223541 GFRA1B coding upstream 285556 3193037 ~ 3223561 (+)
CI01000055_03532706_03537026 NA coding downstream 13244 3531374 ~ 3537194 (+)
CI01000055_03539420_03563869 CCDC186 coding downstream 21018 3539148 ~ 3563895 (+)
CI01000055_03604945_03612832 DCLRE1A coding downstream 86815 3604945 ~ 3613140 (+)
CI01000055_03653282_03656353 NA coding downstream 135078 3653208 ~ 3656423 (+)
CI01000055_03667192_03685378 NRAP coding downstream 148606 3666736 ~ 3685893 (+)
G239526 NA non-coding upstream 161581 3347268 ~ 3347536 (+)
G239499 NA non-coding upstream 189657 3316914 ~ 3319460 (+)
G239509 NA non-coding upstream 201943 3306896 ~ 3307174 (+)
G239457 NA non-coding upstream 270920 3237988 ~ 3238197 (+)
G239546 NA non-coding downstream 62771 3580901 ~ 3581110 (+)
G239565 NA non-coding downstream 106653 3624783 ~ 3625005 (+)
G239598 NA non-coding downstream 186894 3705024 ~ 3705225 (+)
G239599 NA non-coding downstream 189337 3707467 ~ 3708004 (+)
G239646 NA non-coding downstream 351602 3869732 ~ 3925859 (+)
CI01000055_02542526_02542861 NA other upstream 964999 2542216 ~ 2544118 (+)
G238534 NA other upstream 1839873 1668410 ~ 1669244 (+)
G237840 NA other upstream 3089185 418925 ~ 419932 (+)
G237680 NA other upstream 3487955 20902 ~ 21162 (+)
G239761 NA other downstream 644120 4162250 ~ 4213402 (+)
G239755 NA other downstream 736080 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 745897 4265119 ~ 4273913 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 1647362 5162990 ~ 5166647 (+)
G240099 NA other downstream 2018388 5525472 ~ 5544153 (+)

Expression


Co-expression Network