XLOC_010017 (lysmd1)


Basic Information

Item Value
gene id XLOC_010017
gene name lysmd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29690708 ~ 29696789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019935
ACATTTAGCCGACGCCATGGCAACAGAAGCTAAGCTAATCTGCTAGGGACTTGTGACAAACAAGTTTTAAGACTTCGTTTAAAATGTAACGTTACTGGTAATACTTAACTTTAGGTTTAtcgtaaacacatttaaatagtcATTTTTTGGGGGAGCGTTACCTCCATTTAATATAAGCCTTACACTAGTCAGCGCGTAATGTTATACATGTTAAAAGTATTAAAACTTCTCCTCTAGGACTGCGCAGGACTACATTATTGTTCCTCTAATGATTTATTCGCTAGTTTAGTGCGTTACAGCTTTATTTTAGTTCCCATTGTCGCTTGCTAACATTAATCATTCAAATGCGTGACAATAAAACAATTGATTTCTTATTTTCATAGCTTTAGACTTTATTTGACCCATAACAGACGCAGTTATGTTCAGTTCTGCCGTAAAGTGTTCAGCAGTAGAAGACGATCAGCTAAAGTTCATCTCAAATCATTATTAGATAAACACTCGGGGAGTCGAGTCATGTCCGCGGATCACTCAGCGACTCTAGCCGGGAGTCACGGCCTCCTCCGCGGCCAGCGCACCCGCTCGTACGGCAGCCTGGTGTCCTCTTCACAATCACCCGTCAGACAAAGGCGAATTGAACACATAGTTCAGCCCGGTGAAACTCTGCAAGGACTGTCACTGAAGTATGGCGTATCTATGGAGCAAATCAAAAGGGCAAACAGACTGTACACAAATGAATCAATATTCCTGAAGGAGTCCCTCTTCATCCCTGTGCTGACGGAGTCTGTGTCTTTCACAAATGGAGTGGAATTGACCGAGGAGAAGACAAgtccagcacaaacacacacactgatttctAATGAGACTTCCAAAAGCCAAACAGACTCTAGCAAATGTGAAGCGAATGCTGATCTGTCACCGGTTGAGTACCTGAAAAAGATAGACAGCTTGATCAATCAGTCCAAGCAAGCTGCTGTGAAGACCTGCCAGGAAGGAGAGAAACAGTTCTCTTCTATAGAGCATCTTCAGCACACTAGTCTGACCTCCAGCACAGCAACATCCCAGCAGGCCATATTGGGTGCTGTTCCTGTTACCATCACCAAACGCACCAGGAATTTGAGGGATAGAGAAGATGAAATCTTCCAGCTCTGATGTAGGCATTTGCTAGGGCTCTTCTGacttatttttgtgttatttgtatAAATACACTGTTTAAGAAGCCTCCCTCTTCTGCAGTCACCTCTTTACAATGTGGAGAGTGCTGAAGGGATTTGCAATAGTGGTGTTTTCCAAACTACTGCCAGCAAGACAAGCACATATATTAGCACTGCAATAACACTGTAGCCCGATGCCTAAAAATATCATGAATATCAGTATCTCTTAAAAGCTCAACCAAAGTAATGACTGTTTTCTGTTTGCATAAAAGTGCTAACCAGGAATGTAGCTTGAGAAATAGTGGTACTTCTAGATAATATTTAATATACCTCACACATACTCGATAGAAATGCTTCAGTTTTCAGGAAATTGAAGGAGTGTATGCTTTAGGAATGTGCCATTGGGAATCGATCAGATGTGAGCACAATGCATAGTTTTGCACTGCAGTCATCTTGGTTTTGTGATGTTTACAATGTGCTAAAGTGTCTAATACCATTTGTGGTTACCAAATCATGATAAAGGCTTTGATTTATGATTTTTGATTGTGTTTTTCATCAGTGATTTGTGAACTTGAGACTTATGCCACAGTTAATTATCGTGCTTTGAAACTCTCAGGTCAAATGCTAAAAACTTAACTTCAGTATGAAGTCTTGTGTGATTATTCAGTGGTAAAGAACAGATGATTTAAGCAGTGTGTAACGTAATCATGCATTGTGTTCATGCAGTTAATTTCACAATTGAATTGTGCCAGCATTACATCAATTGTGCACTTTTAATCggaaacatttttataatttaatttcacatttatACAAAGGGGGTGAATTGTGAATATGAATGTCTTCaacgaaaaataaaatatagtaatgtTGCTATGGTAA

Function

symbol description
lysmd1 Is expressed in central nervous system. Orthologous to human LYSMD1 (LysM domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1094 Is expressed in central nervous system. Orthologous to human LYSMD1 (LysM domain containing 1).

Ensembl:

ensembl_id ENSDARG00000054789

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019935 True 2033 mRNA 0.40 3 29690708 29696789

Neighbor

gene id symbol gene type direction distance location
XLOC_010016 tmod4 coding upstream 5850 29650698 ~ 29684858 (+)
XLOC_010015 vps72b coding upstream 42970 29630965 ~ 29647738 (+)
XLOC_010014 NA coding upstream 90040 29591119 ~ 29600668 (+)
XLOC_010013 mcl1b coding upstream 102739 29586004 ~ 29587969 (+)
XLOC_010012 ensab coding upstream 113000 29555801 ~ 29577708 (+)
XLOC_010018 NA coding downstream 24838 29721627 ~ 29813252 (+)
XLOC_010019 AL928927.1 coding downstream 206855 29903644 ~ 29908970 (+)
XLOC_010020 sema6e coding downstream 305816 30002605 ~ 30271444 (+)
XLOC_010021 FP103008.1 coding downstream 383754 30080543 ~ 30080661 (+)
XLOC_010022 LO017848.1 coding downstream 604750 30301539 ~ 30306358 (+)
XLOC_010006 NA non-coding upstream 439860 29245880 ~ 29250848 (+)
XLOC_010005 NA non-coding upstream 459861 29211362 ~ 29230847 (+)
XLOC_009994 NA non-coding upstream 1023375 28660395 ~ 28667333 (+)
XLOC_009989 CR936250.1 non-coding upstream 1302545 28388046 ~ 28388163 (+)
XLOC_010024 NA non-coding downstream 633074 30329863 ~ 30330881 (+)
XLOC_010029 BX510336.1 non-coding downstream 1273712 30970501 ~ 30971157 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_08078236_08079316 LYSMD1 coding CI01000027 null 8078236 ~ 8079950 (+)