G239755


Basic Information

Item Value
gene id G239755
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4254210 ~ 4255092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272029
TCTGAGTGCTCTGGAGTGGCCCATCCCGCCTTGTCTGAGCCCCGGCTGCTCGAGTCAGGACTTGGCGCACGGAGGAAGGCCGTCTTCCATTTGCTCTTCTTCAAGAGTAAATTACGAGGACCATCCTGACTAGCTTCAGAACAGGGGCTCGAACCACCGGCACTGCCGTCACCTTCCTCCAAGGCACGAAGCTCAGCCTTTTTTCCTTTCTAGTGCTAGTTCTAGTTCCATGGTGTCTTCTTCTGCCTCCTCCTCCCTGTCGGAAGATTCTGCTGAGTGGTTCCTGCTGCGCTGGTTACTCTGGCTGTCCGTGTCTCGGAGAGCTGGGGAGTCCAAAGACGGAGTGCCTTCTCCCTCTAGTTCCTGGGCCGCTTCTACGGTCTCCTCTGTGGCCAGCACCTTCTTTCTCCACTTCTCCTCTGCCTCCTTCACCTCTTCTGGGATGAGAGGAGCAAGAAGAGTAGCGGCCACTCCTCTCCTCTCTTCTTCCTCGCTGGTCAAAGCCACAACACTCTCGATTACTTCCTTTCTTTTTGGTTTCTCTCTTAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU272029 True 550 TUCP 0.55 3 4254210 4255092

Neighbor

gene id symbol gene type direction distance location
CI01000055_04229735_04231409 NA coding upstream 22608 4229735 ~ 4231602 (+)
CI01000055_04220373_04228785 SLC15A5 coding upstream 25304 4220373 ~ 4228906 (+)
CI01000055_04104413_04124421 AASS coding upstream 129789 4104413 ~ 4124421 (+)
CI01000055_04097751_04100235 FEZF1 coding upstream 153715 4096787 ~ 4100495 (+)
CI01000055_04035172_04094367 CADPS2 coding upstream 159554 4035097 ~ 4094656 (+)
CI01000055_04265119_04272728 NA coding downstream 10027 4265119 ~ 4273913 (+)
CI01000055_04288760_04295553 NA coding downstream 33668 4288760 ~ 4295782 (+)
CI01000055_04297863_04299835 NFYBB, NFYB, NFYBA coding downstream 42771 4297863 ~ 4300318 (+)
CI01000055_04312501_04314406 NA coding downstream 57409 4312501 ~ 4315015 (+)
CI01000055_04315348_04320581 NA coding downstream 59951 4315043 ~ 4320581 (+)
G239754 NA non-coding upstream 3293 4249518 ~ 4250917 (+)
G239748 NA non-coding upstream 127184 4126527 ~ 4127026 (+)
G239643 NA non-coding upstream 288247 3880366 ~ 3965963 (+)
G239646 NA non-coding upstream 328351 3869732 ~ 3925859 (+)
G239599 NA non-coding upstream 546206 3707467 ~ 3708004 (+)
G239799 NA non-coding downstream 4238 4259330 ~ 4261799 (+)
G239804 NA non-coding downstream 19203 4274295 ~ 4274524 (+)
G239806 NA non-coding downstream 19878 4274970 ~ 4282823 (+)
G239827 NA non-coding downstream 127598 4382690 ~ 4385394 (+)
G239761 NA other upstream 40808 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 1710092 2542216 ~ 2544118 (+)
G238534 NA other upstream 2584966 1668410 ~ 1669244 (+)
G237840 NA other upstream 3834278 418925 ~ 419932 (+)
G237680 NA other upstream 4233048 20902 ~ 21162 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 910400 5162990 ~ 5166647 (+)
G240099 NA other downstream 1281426 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 1359286 5614065 ~ 5617591 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 1831733 6087034 ~ 6088759 (+)

Expression


Co-expression Network