XLOC_010022 (LO017848.1)


Basic Information

Item Value
gene id XLOC_010022
gene name LO017848.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30301539 ~ 30306358 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019942
CGCTCTTCTACCATTTGCATTCATATTAGTATAAATGGGAATGAATCACCCATCCCTTTCCTCACACTGGAGCAGAAGGCTGCCTTCGTCTTcgtcctcctcctcttcatctttCTGGGGCTGCTGATCGTGCGCTGCTTCCGAATCCTGCTGGATCCGTACAGCAGCATGCCGAGTTCCACATGGACAGACTATATGGAAAAAGACACCTTCGACTACCGCATTGCCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112961

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019942 True 231 mRNA 0.50 2 30301539 30306358

Neighbor

gene id symbol gene type direction distance location
XLOC_010020 sema6e coding upstream 30095 30002605 ~ 30271444 (+)
XLOC_010021 FP103008.1 coding upstream 220878 30080543 ~ 30080661 (+)
XLOC_010019 AL928927.1 coding upstream 392569 29903644 ~ 29908970 (+)
XLOC_010018 NA coding upstream 488287 29721627 ~ 29813252 (+)
XLOC_010017 lysmd1 coding upstream 604750 29690708 ~ 29696789 (+)
XLOC_010023 tmem79b coding downstream 9819 30316177 ~ 30326055 (+)
XLOC_010024 NA coding downstream 23505 30329863 ~ 30330881 (+)
XLOC_010025 pear1 coding downstream 131683 30438041 ~ 30520157 (+)
XLOC_010026 mc2r coding downstream 269543 30575901 ~ 30577136 (+)
XLOC_010027 fam210ab coding downstream 298029 30604387 ~ 30612730 (+)
XLOC_010014 NA non-coding upstream 700871 29591119 ~ 29600668 (+)
XLOC_010006 NA non-coding upstream 1050691 29245880 ~ 29250848 (+)
XLOC_010029 BX510336.1 non-coding downstream 664143 30970501 ~ 30971157 (+)
XLOC_010030 NA non-coding downstream 784640 31090998 ~ 31094580 (+)
XLOC_010031 NA non-coding downstream 815398 31121756 ~ 31135431 (+)
XLOC_010035 CR855311.5 non-coding downstream 1328112 31634470 ~ 31634595 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G142512 NA non-coding CI01000027 null 8403385 ~ 8403776 (+)
eurasian perch (Perca fluviatilis) G125090 NA misc NC_053123.1 CM020920.1 18700887 ~ 18704677 (-)
tiger barb (Puntius tetrazona) G113942 LOC107587908,LOC100536175,LOC103025787 non-coding NC_056714.1 CM032083.1 18133886 ~ 18136989 (+)