XLOC_010023 (tmem79b)


Basic Information

Item Value
gene id XLOC_010023
gene name tmem79b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30316177 ~ 30326055 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019943
GCCCTGGGACAATGGATAAGGGCCCTCCTGGACCAGTAGCGGTTCCCCAAACCCCCCAATGGGTAGCAGAAGTGGACAAGTTAACAAAGGATGTGAACAGCACTGAGGATGAAGAAGAGCCGATGAAGTCTGCAAAAATGGAACCCAGTACCCTACCATGGCCTGAGAACAAACCCGAAACACAGATTCCCCCAGTCCGTGATGGTGAAACTACAAGCGTGAGGTCCGATTGCACTTCTCTCCGTGGTGGTCTCAGCCGGACCGAGAGCGAGCGAGAAGAGTTCATGATGAAAGAGAAGAGGAAGACTGGTGAGGATTGGAGGGAGATGGAGGCTGGGAAAGAAGAGAGAGTTTCTGACATTGGACTGAGAAACGGGGTGAAAAGCACCCTTACTGAGATCGAGTTGGAAGAGGTCAACACAATGCCGGAGAACGCAGCTCGAGTCTTCAGCCCCAGCATCACCATCCTGCGCTCCACCAGTCAGCAGGAGGCTGCAGAACACTGGAGAGATCAAGAAGAGGAAGCGAGAAGCCCCTTCCTTGGGTCACATGGGACACATGGCACACCGCTAGAAGAGTATTACCAGGACTGGCCGGATACACACAGATCACACTGCTgtaACTGTGGTTGCTGTAACCGTGATGCTCTTAAACTGGGAGCTTCCATGTTCACTTCAGCTTTGATCttccccttgttggtgtggggTGGCTATGTTTTCCTGCCCTTTGATGCTCCTCTACTGGACAGTGCCCCCCTAAGGCTGGTCTACACCCTGCGCTGCTCAGTTTTTGCAGTCATACCAATTGTTCTTGGTATGTTGGTTCTTGGCGTGTCCCGTCTGTGGTATCGCTCCTTGAAACCGCGGTTTGAAGGGGAGAAGGAAGTTAAGCAGGTTGCTGTTCATCAGCGTTATGTGGAGGACTCCATCTCGCTTTTCCTGCTTTACTTTCTCCAACTGACTGTCATGGCTGCCTACCTGAATCAGGATCTGCTTAAACTTATTCCCCTCCTCACCATTGTTTTTGCCTTTGGCAGATTGCTCTACTGGGTCGCAGCAGCGTGTGGCAGCAGTTTGAGAGGCGTCGGCTTTGGCTTTTCGTTTCTGCCCATGTTGGTTATGCTGGTGGCCAACATCTACTTCATCTTCCTCTCCGAATCTGCAGGCTCAATCTTTGCCCCGAACATCCCAGATCCACCTGTTCCTTCCAACAAACAGAGGTTCTGGGGATAAACAGACGACACATGACTATTTTCTGCTGCTGCCAAATATAGACCAGATCGCTTTCGGCTTAAAGCCCACTGAAATTGGACTACGAGACATTAGTTTCTAAGAATGTGATTTCGTTTTTCTCTCCTGTTCTCTGCATCCCAGAGCATTTTTGTATAAAGAATAGATGGGTTAGATTTGCCAGAACTTTGCTCAAAAGGAGAGAGATATGAGAAGTAGAAAGAaggtaatgttttatttttctctgaACTAACTTGTGTACTTGGGAACTTGTGTAACTTTAGATGTTAAACtatgaattaaaaaaaggaacaacCCTTTATTGCAGCCAAACATGAGCGGAATAAGCTGCTTCATCCATCAAGAGAGCTTCACATGAACCCGTTTCAATGCATCTATTTTAAGATGAGAATATCAACAGAATGAGCACAATTCTGAATATTTATACCACATGTGTTTTTTAAAGTtggcaatgtttaaaaaaagtttgcatTTGTTAGGCATTGTTTGCTTATTCAAGTCTAagctgttgtgttgtgtgtgaagtTAGTGGCTTGCCCAAACCTGTATTTTTCCACAGCCACTCCTTTATCTCTCTTTGAAAATTTAATGGCAATGTGAAGTTTATTCAGAGTGTAGATGTAtatttttaacagatttgttaAAAGGTTTAGAAAGATactggtagttttttttttcctgaagcaCTTGCGAAATGCTAATCAAAGCTTCAAAGAGGTTTATCTTTTGGGCAAATGAATCTATCTAGCttaatttaaatcacatttttaacaGTCAGACtctttgaataaatgtttttggtaataaataaacatgcatacatTAACTAAAACGTTGTTAATCGCAAAGCGTCGTGAAAAGTGAACCTGTTCAACAAGTTCgcgtgtttttttgttttgtttgttttttgtcggAGGTCAAAAATAGGCCGTTTCCTGAAGTCTCATTTGACAGGTCGAATACAGGTTGAAAGAGGACCACCAGCTCAACTAATAATTGATTATATCATACTGTAAATGTCTGAGTCAGAATGACATCTCAAAGCCGAAGGAGAAACGGCCCTTGTTTGTTGCGGATGAGGGAGAACTGCCCGTTTCGAAAGCTGAGGAGAAATTGCTGTGGTAAGTTTAAGgattatctatttaaaaaaagaggaaaatatctaaaaaaaaataaataaataaagattatatataaaaatagtaaGTTAACGTCACTGCTGTTACGCAATTaattcaaacaacaaaaaaagctcaCTTTAAGTAACCTGGTAGATATATTTGTCGGCCTACTCTGCTTGAAGTAAAGTGTTCGAGTATGTCATTCAGTATTGTCAATAATGATATATGTTGTGTTTGCCCTCATAAATTTGACATACATTCAGATTTGATCGTTGCTTGTATTTAGATCGGTGTATTCATGTTCCGTGGTGATTGCTCACTATGCCAGCTGTCTGTCGGAAGTTGCAAATCAAGTTATGTAATGCCACTTGTTTGATCgtccacattattattattacacagatTCGAGGAACGCGCTCGTGCCAGACTGGAGTCAGTGCAGATCATGCCCTCAGTCACAGACCGGACCAAAGTGTTGTATGAACACAATCGAGACCTTCTGCAATCCCTCACAGCCTGATTCCCGGCCCCGAGAAGAGCTCTCAGGTTTGCGTCTAACATTCTTTGCGCTGAATCTGTCGGCTGTTTAttagattcattttcttttaatggCCCCATTCTGTAACGTTGCAATTAAGTCTAGCTCTCTAGCTTGAGTAAGCTAGTTTACTCGGTTTGGGTAAGGACAATTGGTAAAACGGATAATAAGTCtacaagagagagaaaaaaaaactaaagcgtTAGCCTATCTAGATGCGGCCTTGCATCTCTCAGCGACGAAGAGCTAGTGACGTCAATGAGGGGTGtgtaggtgagcccattaaaaagcattgcatgcaactcagattgcatctgcaccatgTCTTCATCCAGACGCCCCCAAAAAATGAGAAGCCCCAGTCTGCAGCCTGCAGATTTGGGCGGGGATGAATCTGGGGCGGGACTGCACATTCAGCCACGCCCACCTGTGATTTCATTGGTTAGTGGAAACGTAATAGCGTCAATGCCCATACGTGCTGTCAACAGGAAATGCATTTGCATCTttctaaatattgtttttattgctaataaacacaaaaatacacaaaagtgGACATTCTTGCTGAGTGTTTTAAATGTTAACTATGTTAACAGTTATGTGAATTTCATAATGGTATTTCTCCtgcaaaaaatattacaaaagaccAAAAAGACTCTCTTCACAATGGTGTCCCTTCATGTCTGCCTTTCAGAAATGCAGTGATTTTAGTTCTGattttttaatggtttattattttacttcaaaataaaaatgcatattgcatatttacaACAATTAAAGGTGGAgtctgaacaaaaataaaataataaataaaaatgcagtgtATTTAGTTCAGTTAATTCTTTTTCCCTTTGAATGGGAGAGATCTCTGGAAAATTTACAACTGATAATATTATCATTACACTTTGATTTAAGGCTATTAAAATATCGGGCGTGTGTCCAAATGTTTCTCTTTCAATACTGCACTGCTTTGAGTTtgaaaattacttatttattaaaagcaGGGATAAGCTATTATTTATCAAGGGAAGTATATGTTTGTAACCTTTTCACTTATTAAATCAGATTATTTCATCATATAATGCATTTGTTTACTTTGATGCtgctataaatataaatgtatattatccgTTATATGTAAATGTCCCAGCACGAGAAAAAttctttattacattttttcatattacCTGGTATGTCATCTATGAATGCAATCGGTTCATTTATTGATCCATTAaagttttgttcagtttctccatttGAATGAAGACAGTGCTCTGCTGCCACCTACGGGGTGGTTTTGATATCTGttctacattttatttaatatattaattaattagttaatccaaaagtttataattttataatctaATACTGCTAAATTACAATGCAGTcttcttggttttatttttgtaatatttgtaaatacagg

Function

symbol description
tmem79b Predicted to be involved in regulated exocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and trans-Golgi network membrane. Orthologous to human TMEM79 (transmembrane protein 79).

GO:

id name namespace
GO:0045055 regulated exocytosis biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120807-1 Predicted to be involved in regulated exocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and trans-Golgi network membrane. Orthologous to human TMEM79 (transmembrane protein 79).

Ensembl:

ensembl_id ENSDARG00000076861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019943 True 4344 mRNA 0.40 4 30316177 30326055

Neighbor

gene id symbol gene type direction distance location
XLOC_010022 LO017848.1 coding upstream 9819 30301539 ~ 30306358 (+)
XLOC_010020 sema6e coding upstream 44733 30002605 ~ 30271444 (+)
XLOC_010021 FP103008.1 coding upstream 235516 30080543 ~ 30080661 (+)
XLOC_010019 AL928927.1 coding upstream 407207 29903644 ~ 29908970 (+)
XLOC_010018 NA coding upstream 502925 29721627 ~ 29813252 (+)
XLOC_010024 NA coding downstream 3808 30329863 ~ 30330881 (+)
XLOC_010025 pear1 coding downstream 111986 30438041 ~ 30520157 (+)
XLOC_010026 mc2r coding downstream 249846 30575901 ~ 30577136 (+)
XLOC_010027 fam210ab coding downstream 278332 30604387 ~ 30612730 (+)
XLOC_010028 gstk2 coding downstream 606989 30933044 ~ 31006689 (+)
XLOC_010014 NA non-coding upstream 715509 29591119 ~ 29600668 (+)
XLOC_010006 NA non-coding upstream 1065329 29245880 ~ 29250848 (+)
XLOC_010029 BX510336.1 non-coding downstream 644446 30970501 ~ 30971157 (+)
XLOC_010030 NA non-coding downstream 764943 31090998 ~ 31094580 (+)
XLOC_010031 NA non-coding downstream 795701 31121756 ~ 31135431 (+)
XLOC_010035 CR855311.5 non-coding downstream 1308415 31634470 ~ 31634595 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_08412094_08418277 TMEM79B coding CI01000027 null 8410163 ~ 8418633 (+)