G240077


Basic Information

Item Value
gene id G240077
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5036120 ~ 5036583 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272404
GCCCTCCCGTTGGTTCAAGGTCCATGGCTCGTCTACATCGAAATGTGTGTCTCCTCCCATTCCGGGACCTGGGAAAAAAGCATGTGCCAGAGACCCTCCTTCCCCATCGAAGAGAGACATATCGCCATGATACCCAGAGGCAAACAGTAGTATTATGTCTGGCCCCTCACTGCCATTCTTTATCTCGTGATATGGGACCTCCTCGAACCGCACAGGCGTTACTTTCTCCCAAACCTTAAAGGCTTTGCGAATAGCCTCATAGGTCAGCTCCTGGCCAACTTTGGGTGAGTGGTTCTGAATACTGTAAGTCAGCTTGTCCTGATCCCACTTGTGGCCAGTAAGCGCATACCGCTTACGCCGAGCACCTCGCTCTGTTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272404 True 379 lncRNA 0.53 2 5036120 5036583

Neighbor

gene id symbol gene type direction distance location
CI01000055_04948850_04952489 NA coding upstream 83486 4948624 ~ 4952634 (+)
CI01000055_04920053_04936147 NA coding upstream 99526 4919069 ~ 4936594 (+)
CI01000055_04906688_04910244 C14H11ORF96, CLG19H11ORF96, C6H11ORF96, CUNH11ORF96 coding upstream 125142 4903960 ~ 4910978 (+)
CI01000055_04888583_04898249 ALKBH3 coding upstream 137752 4888583 ~ 4898368 (+)
CI01000055_04869576_04887020 HSD17B12, HSD17B12A coding upstream 148161 4869483 ~ 4887959 (+)
CI01000055_05047161_05054848 VAC14 coding downstream 9648 5046159 ~ 5055449 (+)
CI01000055_05086576_05086973 NA coding downstream 49443 5086026 ~ 5087381 (+)
CI01000055_05121603_05155153 GALNT18B, GALNT18A, GALNT18 coding downstream 85020 5121603 ~ 5155153 (+)
CI01000055_05163240_05166231 PIGY, PYURF coding downstream 126407 5162990 ~ 5166647 (+)
CI01000055_05176060_05176484 NA coding downstream 139244 5175772 ~ 5176633 (+)
G240078 NA non-coding upstream 3921 5027070 ~ 5032199 (+)
G240081 NA non-coding upstream 23428 5012430 ~ 5012692 (+)
G240065 NA non-coding upstream 30240 5005629 ~ 5005880 (+)
G240064 NA non-coding upstream 31918 5003987 ~ 5004202 (+)
G240063 NA non-coding upstream 32374 5003443 ~ 5003746 (+)
G240116 NA non-coding downstream 45949 5082532 ~ 5082746 (+)
G240068 NA non-coding downstream 121334 5157917 ~ 5158277 (+)
G240071 NA non-coding downstream 122149 5158732 ~ 5159015 (+)
G240143 NA non-coding downstream 132396 5168979 ~ 5169329 (+)
CI01000055_04265119_04272728 NA other upstream 763405 4265119 ~ 4273913 (+)
G239755 NA other upstream 781028 4254210 ~ 4255092 (+)
G239761 NA other upstream 822718 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 2492002 2542216 ~ 2544118 (+)
G238534 NA other upstream 3366876 1668410 ~ 1669244 (+)
G240099 NA other downstream 499935 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 577795 5614065 ~ 5617591 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 1050242 6087034 ~ 6088759 (+)
G240344 NA other downstream 1127277 6163860 ~ 6164011 (+)

Expression


Co-expression Network