XLOC_010024


Basic Information

Item Value
gene id XLOC_010024
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30329863 ~ 30330881 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021966
tcaatttaaaaagtttatggtccaggatcaacattagtcaatTTAAAAGTTGGTGGTAtaggatcaacattagtcaatttaaaaagttgatggtccaggatcaacattagttaatttaaaagttggtggtccaggatcaacattagtcaatttataaagttgatggtccaggatcaacattagtcaatttataaagttgatggtcctggatcaacattagtcaatttataaagttgatggtccaggatcaacattagttaatttcaaagttgatggtccaggatcaacattagtcaatttataaagttgatggtccaggatcaacattagtcaatttataaagttgatggtccaggatcaacattagtcaaGTTCaaagttgatggtccagg
>TCONS_00021967
gtttatggtccaggatcaacattagtcaatttatACAGTtagtggtccaggatcaacattagtcaatttaaaaagttgatggtccaggatcaacattagtcaatttatACAGTtagtggtccaggatcaacattagtcaatttaaaaagttgatggtccaggatcaacattagtcaatttataaagttgatggtccaggatcaacattagtcaatTTAAAAGTTGGTGGTAtaggatcaacattagtcaatttaaaaagtttatggtccaggatcaacattagtcaatttaaaaagttgatggtccaggatcaacattagttaatttaaaagttggtggtccaggatcaacattagtcaatttataaagttgatggtccaggatcaacattagtcaatttataaagttgatggtcctggatcaacattagtcaatttataaagttgatggtccaggatcaacattagttaatttcaaagttgatggtccaggatcaacattagtcaaGTTCaaagttgatggtccagg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021966 False 392 lncRNA 0.33 2 30329863 30330881
TCONS_00021967 True 528 lncRNA 0.34 2 30330280 30330881

Neighbor

gene id symbol gene type direction distance location
XLOC_010023 tmem79b coding upstream 3808 30316177 ~ 30326055 (+)
XLOC_010022 LO017848.1 coding upstream 23505 30301539 ~ 30306358 (+)
XLOC_010020 sema6e coding upstream 58419 30002605 ~ 30271444 (+)
XLOC_010021 FP103008.1 coding upstream 249202 30080543 ~ 30080661 (+)
XLOC_010019 AL928927.1 coding upstream 420893 29903644 ~ 29908970 (+)
XLOC_010025 pear1 coding downstream 107160 30438041 ~ 30520157 (+)
XLOC_010026 mc2r coding downstream 245020 30575901 ~ 30577136 (+)
XLOC_010027 fam210ab coding downstream 273506 30604387 ~ 30612730 (+)
XLOC_010028 gstk2 coding downstream 602163 30933044 ~ 31006689 (+)
XLOC_010029 BX510336.1 coding downstream 639620 30970501 ~ 30971157 (+)
XLOC_010018 NA non-coding upstream 516611 29721627 ~ 29813252 (+)
XLOC_010014 NA non-coding upstream 729195 29591119 ~ 29600668 (+)
XLOC_010006 NA non-coding upstream 1079015 29245880 ~ 29250848 (+)
XLOC_010030 NA non-coding downstream 760117 31090998 ~ 31094580 (+)
XLOC_010031 NA non-coding downstream 790875 31121756 ~ 31135431 (+)
XLOC_010035 CR855311.5 non-coding downstream 1303589 31634470 ~ 31634595 (+)
XLOC_010041 NA non-coding downstream 1630027 31960908 ~ 31985059 (+)

Expression


Co-expression Network