G240143


Basic Information

Item Value
gene id G240143
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5168979 ~ 5169329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272476
TTTTTTGGTGCACAAAAAGTATTCTCGTCGCTTTATAATATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTCTTTAGTAGTTTTCTGGGCATCTGAAAGTGTTAATTATTTTGCTGGCAATGCAGGCCTCACTGATCCATCGGATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAATGAAGGTCTTACAGGTGTGGAACGACATAAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTGAAGATCTTTTTGATGAAATCCAAGAGGTATATGACTCGTCCATAGACAGCAATATAATCAACACTTTCAAGGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272476 True 351 lncRNA 0.35 1 5168979 5169329

Neighbor

gene id symbol gene type direction distance location
CI01000055_05163240_05166231 PIGY, PYURF coding upstream 2351 5162990 ~ 5166647 (+)
CI01000055_05121603_05155153 GALNT18B, GALNT18A, GALNT18 coding upstream 13826 5121603 ~ 5155153 (+)
CI01000055_05086576_05086973 NA coding upstream 81598 5086026 ~ 5087381 (+)
CI01000055_05047161_05054848 VAC14 coding upstream 113530 5046159 ~ 5055449 (+)
CI01000055_04948850_04952489 NA coding upstream 216345 4948624 ~ 4952634 (+)
CI01000055_05176060_05176484 NA coding downstream 6498 5175772 ~ 5176633 (+)
CI01000055_05183333_05195895 BTBD10B, BTBD10, BTBD10A coding downstream 14004 5183333 ~ 5196570 (+)
CI01000055_05212820_05215358 BORCS5 coding downstream 42142 5211471 ~ 5216143 (+)
CI01000055_05216403_05221104 NA coding downstream 46871 5216200 ~ 5221170 (+)
CI01000055_05263543_05300250 TMTC3 coding downstream 93918 5263247 ~ 5300649 (+)
G240071 NA non-coding upstream 9964 5158732 ~ 5159015 (+)
G240068 NA non-coding upstream 10702 5157917 ~ 5158277 (+)
G240116 NA non-coding upstream 86233 5082532 ~ 5082746 (+)
G240077 NA non-coding upstream 132396 5036120 ~ 5036583 (+)
G240154 NA non-coding downstream 63485 5232814 ~ 5233313 (+)
G240163 NA non-coding downstream 77305 5246634 ~ 5251328 (+)
G240171 NA non-coding downstream 147957 5317286 ~ 5317495 (+)
G240176 NA non-coding downstream 157124 5326453 ~ 5327130 (+)
CI01000055_04265119_04272728 NA other upstream 896264 4265119 ~ 4273913 (+)
G239755 NA other upstream 913887 4254210 ~ 4255092 (+)
G239761 NA other upstream 955577 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 2624861 2542216 ~ 2544118 (+)
G240099 NA other downstream 367189 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 445049 5614065 ~ 5617591 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 917496 6087034 ~ 6088759 (+)
G240344 NA other downstream 994531 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 1164995 6310117 ~ 6334801 (+)

Expression


Co-expression Network