G240099


Basic Information

Item Value
gene id G240099
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5525472 ~ 5544153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272429
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGGGCTGAACAATGTATTCTTTATATTTGATAATGTATATCAAAGCAACATCCATAAGATGGTGATTTTTTTTTTTCTGTTGTTTTTATTCACTTTGACACATATAAGAATTATTGTTTTATGTTTAATATGGATTATTCTTGGCGTGCTCCATGATGGCTATCAGGGCCAGCCAGGTCTCCTCAGCAGTGGGGACGATCTGATTGGCTGGCAAGAGGAAACCATAGCGACCAGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGATCATAAGTCCAGTCAATAGTGCCTCCACTGGCTTGGTCTGAGAACAAAACAGAGAGATTGTTTG
>TU272431
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCATGTCCATAGCATTATTTATTTGTCAAGAAGCAATGTAATAAGATGGATAATCTATAATCTGACAGTCATTATTGCAAAATAAACCCCTTTTTTGCCATAATGACCGACTGACTGTACATTATCCCTTGTGCATTTTACACTTACTCACATACTTATGCACTTTGACTCATATTGTAGAATGTTTAATATGGATTATTCTTGGTGTGCTCCATGATGGTTATCAGGGCCAGCCAGGTCTCCTCAGCAGTGGGGACGATCTGATTGGCTGGCAAGAGGAAACCATAGCGACCAGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGATCATAAGTCCAGTCAATAGTGCCTCCACTGGCTTGGTCTGAGAACAAAACAGAGAGATTGTTTG
>TU272427
AAACAGACGCTTCATATTTTGTGTGAAGTACAATAAATGTTATAAAACTCATCGGTAAACAGGCTTGTACTAATATAGTGGATAAAAAGAAGAAGACAATATAAGTTATAACCATAATTAAACTAAACTATACCTGCTCGATCTCCATGCAGCATATATTCGCAGTTTCTGACATTATAGTGCGTACTGACTGACTCCTGACACCGGAGAATGAGCTCTTGAAGCTCCGCCCTCTTAGGCCAAGTGCAGCAGCTCATTTGCATTTAAAGGGCACTCACTAAAACGGTGCGTTTTTGCTCAACCCCAAAAAGTGGCAATTTTAACATGCTATAAAAAATGATCTGTGGGGTATTTTGAGCTAAAACTTCACATACATACTCTGGGGACATCAGAGACTTATTTTACTTGTAAAATGGGGCATAATAGGTCCCGTTTAAAATTTAATATTTGATACCAAGAATTTGATTCCTGCGAGTGATGATGTCATTGTTGATATCAAGAATTCACGTTTTTACTAGTGAAAATGTAATTCCCTAATATTTCTTAATGTTTGTTGTCGTCCCTGGCAAAGCTGTAAATAAAACGCTAAATTCTTCATGCATCTCAGTCATCGACTGTAGTGAAAATGACATCAAACTGTGAAGACATTAATGTTAACATTACTGTAGTGTTGTGGTGTTTGTCTTCTTGCTAAGCCTTAAGTTTTGTAAATTGTGATGGACTATTTTTGTTAGTGGAAGCTTCAGGAGAAAATACAGGTAAGATTATAAAACACTTTCAACTCAAATCAACATTTCATGTCCATAGCATTATTTATTTGTCAAGAAGCAATGTAATAAGATGGATAATCTATAATCTGACAGTCATTATTGCAAAATAAACCCCTTTTTTGCCATAATGACCGACTGACTGTACATTATCCCTTGTGCATTTTACACTTACTCACATACTTATGCACTTTGACTCATATTGTAGAATGTTTAATATGGATTATTCTTGGTGTGCTCCATGATGGTTATCAGGGCCAGCCAGGTCTCCTCAGCAGTGGGGAGGATCTGATCAGCAGGCAGGAGGAAACCATAGCGACCAGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGTTCATAAGTCCAGTCAACAGTGACTCCATCGGCTTGGTCTGAGAGCAAAGAAATTGTTAGCAATTAAATTAATAGTCATTATGATATTGACAAGTTAAGAGCTTTAGATTCACTGTAAATGTACTTACAGATGGTAGAAATGATGCTGCCATATGTATATGCAGTGTTATACAAAGACTTCAGTTCAGTGATGGCCTTTCTAGCGAGCTCATGCTGAAGGGACAATACAGATTTTATTTGAATAGATCTAATATGTTAAAATCATCAAAATCAGCATGTTTCTGTGACATACCAGTTCAGCCTGGTCTTTGGCAGCAGTCGCTGTGAATCCATATGGATACAAGAGCATCTGGGAATAGCTGTGGATGGACAAAAAGGCCTTGAGGTTGCCGTGAGATTTCACAAAGTCCACAATGGCCTTGACCTCTGCAGTTCAGTTTTGTCCTTGGCAGCAGTGCTTGTGTATCCATATGGATAAAGGAGCATCTGGGAATAGCTGTGGATGGACACAAAGGCCTTGAGGTTGCCGTGAGATTTCACAAAGTCCACAATGGCCTNNNN
>TU272428
TGGCAAATGAAATGAGCGTGAACAATTAAATATCCAATATAAACCTATACGATATATCAGTTTCCAGAAGCTTTTCAGGGCTGAACAATGTATTCTTTATATTTGATAATGTATATCAAAGCAACATCCATAAGATGGTGATTTTTTTTTTTCTGTTGTTTTTATTCACTTTGACACATATAAGAATTATTGTTTTATGTTTAATATGGATTATTCTTGGCGTGCTCCATGATGGCTATCAGGGCCAGCCAGGTCTCCTCAGCAGTGGGGACGATCTGATTGGCTGGCAAGAGGAAACCATAGCGACCAGTGTCTCTCAGCTCAAAGGTGTAGGAGTACTTGATGCCCTGATCATAAGTCCAGTCAATAGTGCCTCCACTGGCTTGGTCTGAGAACAAAACAGAGAGATTGTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU272429 False 391 lncRNA 0.35 4 5525472 5543812
TU272431 False 453 lncRNA 0.36 5 5525472 5543812
TU272427 False 1691 lncRNA 0.38 3 5526429 5544153
TU272428 True 415 TUCP 0.39 2 5536518 5543812

Neighbor

gene id symbol gene type direction distance location
CI01000055_05517350_05524400 NA coding upstream 852 5517350 ~ 5524620 (+)
CI01000055_05263543_05300250 TMTC3 coding upstream 224823 5263247 ~ 5300649 (+)
CI01000055_05216403_05221104 NA coding upstream 304302 5216200 ~ 5221170 (+)
CI01000055_05212820_05215358 BORCS5 coding upstream 309329 5211471 ~ 5216143 (+)
CI01000055_05183333_05195895 BTBD10B, BTBD10, BTBD10A coding upstream 328902 5183333 ~ 5196570 (+)
CI01000055_05565166_05572215 TES coding downstream 21013 5565166 ~ 5572457 (+)
CI01000055_05608414_05611862 CAV2 coding downstream 63353 5607506 ~ 5613775 (+)
CI01000055_05614889_05616453 NA coding downstream 69912 5614065 ~ 5617591 (+)
CI01000055_05630944_05688603 MET coding downstream 86791 5630944 ~ 5688603 (+)
CI01000055_05693578_05697926 FAM185A coding downstream 149361 5693514 ~ 5698294 (+)
G240207 NA non-coding upstream 10716 5476054 ~ 5514756 (+)
G240202 NA non-coding upstream 58174 5467085 ~ 5467298 (+)
G240201 NA non-coding upstream 60017 5465202 ~ 5465455 (+)
G240199 NA non-coding upstream 113731 5411507 ~ 5411741 (+)
G240188 NA non-coding upstream 163364 5361861 ~ 5362108 (+)
G240248 NA non-coding downstream 4093 5548246 ~ 5548471 (+)
G240249 NA non-coding downstream 5679 5549832 ~ 5550183 (+)
G240250 NA non-coding downstream 6222 5550375 ~ 5550724 (+)
G240251 NA non-coding downstream 7016 5551169 ~ 5552748 (+)
G240252 NA non-coding downstream 11493 5555646 ~ 5556676 (+)
CI01000055_05163240_05166231 PIGY, PYURF other upstream 358825 5162990 ~ 5166647 (+)
CI01000055_04265119_04272728 NA other upstream 1252757 4265119 ~ 4273913 (+)
G239755 NA other upstream 1270380 4254210 ~ 4255092 (+)
G239761 NA other upstream 1312070 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 2981354 2542216 ~ 2544118 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 542672 6087034 ~ 6088759 (+)
G240344 NA other downstream 619707 6163860 ~ 6164011 (+)
CI01000055_06310117_06334586 GRAMD4B, GRAMD4 other downstream 790171 6310117 ~ 6334801 (+)

Expression


Co-expression Network