Gene
RNA
| Item | Value |
|---|---|
| gene id | G240251 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000055 |
| NCBI id | null |
| chromosome length | 6774723 |
| location | 5551169 ~ 5552748 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU272615 | True | 1580 | lncRNA | 0.37 | 1 | 5551169 | 5552748 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000055_05517350_05524400 | NA | coding | upstream | 26549 | 5517350 ~ 5524620 (+) |
| CI01000055_05263543_05300250 | TMTC3 | coding | upstream | 250520 | 5263247 ~ 5300649 (+) |
| CI01000055_05216403_05221104 | NA | coding | upstream | 329999 | 5216200 ~ 5221170 (+) |
| CI01000055_05212820_05215358 | BORCS5 | coding | upstream | 335026 | 5211471 ~ 5216143 (+) |
| CI01000055_05183333_05195895 | BTBD10B, BTBD10, BTBD10A | coding | upstream | 354599 | 5183333 ~ 5196570 (+) |
| CI01000055_05565166_05572215 | TES | coding | downstream | 12418 | 5565166 ~ 5572457 (+) |
| CI01000055_05608414_05611862 | CAV2 | coding | downstream | 54758 | 5607506 ~ 5613775 (+) |
| CI01000055_05614889_05616453 | NA | coding | downstream | 61317 | 5614065 ~ 5617591 (+) |
| CI01000055_05630944_05688603 | MET | coding | downstream | 78196 | 5630944 ~ 5688603 (+) |
| CI01000055_05693578_05697926 | FAM185A | coding | downstream | 140766 | 5693514 ~ 5698294 (+) |
| G240250 | NA | non-coding | upstream | 445 | 5550375 ~ 5550724 (+) |
| G240249 | NA | non-coding | upstream | 986 | 5549832 ~ 5550183 (+) |
| G240248 | NA | non-coding | upstream | 2698 | 5548246 ~ 5548471 (+) |
| G240099 | NA | non-coding | upstream | 7016 | 5525472 ~ 5544153 (+) |
| G240114 | NA | non-coding | upstream | 10737 | 5537457 ~ 5540432 (+) |
| G240252 | NA | non-coding | downstream | 2898 | 5555646 ~ 5556676 (+) |
| G240254 | NA | non-coding | downstream | 4869 | 5557617 ~ 5557831 (+) |
| G240255 | NA | non-coding | downstream | 10391 | 5563139 ~ 5563936 (+) |
| G240221 | NA | non-coding | downstream | 70069 | 5622817 ~ 5623356 (+) |
| CI01000055_05163240_05166231 | PIGY, PYURF | other | upstream | 384522 | 5162990 ~ 5166647 (+) |
| CI01000055_04265119_04272728 | NA | other | upstream | 1278454 | 4265119 ~ 4273913 (+) |
| G239755 | NA | other | upstream | 1296077 | 4254210 ~ 4255092 (+) |
| G239761 | NA | other | upstream | 1337767 | 4162250 ~ 4213402 (+) |
| CI01000055_06087070_06088629 | ETFRF1, LYRM5, LYRM5B | other | downstream | 534077 | 6087034 ~ 6088759 (+) |
| G240344 | NA | other | downstream | 611112 | 6163860 ~ 6164011 (+) |
| CI01000055_06310117_06334586 | GRAMD4B, GRAMD4 | other | downstream | 781576 | 6310117 ~ 6334801 (+) |
