G241542


Basic Information

Item Value
gene id G241542
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5561343 ~ 5565783 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU274106
CTTTGGTTGATCCCAGGTGGAGCCCATTCATAGGTAACGGACCTAACCACATCTGTCTTGGCAGGCACTGCAGTGGGGGTTGGGACAACAGTAGTGGCAGCACCTAGGCCTTTAGATGGGATGGCAGCAGTGTGGCCTGTCCCTGATGCAGCAGTACGGCCTGCCACTGGGGCAGCAGGGGAGTGAATTGCCGCCCCTGGGGCAGCAGTGGAGTGGACTGCCGCCCCTGGGGCAGCAGGGGAGTGGACTGCCACCCCTGGGGCAGCAGGGGAGTGAATTGCCGCCCCTGGGGCCGCAGTGGAGTGAATTGCTGCCCCTGGGGCCGCAGTGGCACCAACAGGTGGGGCATGAGCAGACGGAGTGCTGGAGGTGGAGGTCTGGCTGGAGCCGGGGACAAAGGTGGAAGGAGAAACAGGAGTAGCAATGCTGATGGCAGCAGCCGGGATGCTGAAAGTGACTTGGTTGCCTCTATAAGACGGGAGGCCATCTCTCTTCAACTTGGCTATAAGGCCTGTGTACTTGGTGTCCTCAAAAAGCTTCCCCACCTTCTTATTCTCCTCAGTCTCGAGCTGCACGTCATGGTCCTCAACGCCGCACTTGCAGTTTCGGCAAATCTTTCGCCAGAAGTGAAGCTCAAATCCTTCACACTTGTCCTTGCATTTCAGACAGGCAGCTCCGGCTCCAATCTCATGGCCCAGGGTTATCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU274106 True 706 TUCP 0.59 2 5561343 5565783

Neighbor

gene id symbol gene type direction distance location
CI01000055_05543598_05551750 NA coding downstream 8331 5543565 ~ 5553012 (-)
CI01000055_05536718_05540416 CBPA1, CPA1.L, CPA1, CPA5 coding downstream 20917 5536678 ~ 5540426 (-)
CI01000055_05527409_05532734 CPA1 coding downstream 28599 5526978 ~ 5532744 (-)
CI01000055_05476481_05514757 POC1B coding downstream 46586 5476481 ~ 5514757 (-)
CI01000055_05450546_05453791 DUS6, DUSP6 coding downstream 106818 5450179 ~ 5454525 (-)
CI01000055_05575276_05587897 NA coding upstream 9269 5575052 ~ 5588039 (-)
CI01000055_05700508_05706528 NA coding upstream 134725 5700508 ~ 5707376 (-)
CI01000055_05711945_05712570 NA coding upstream 145738 5711521 ~ 5712668 (-)
CI01000055_05718689_05727278 FBXL13 coding upstream 152883 5718666 ~ 5727278 (-)
CI01000055_05750004_05751342 NA coding upstream 184221 5750004 ~ 5751677 (-)
G241523 NA non-coding downstream 94778 5466310 ~ 5466565 (-)
G241522 NA non-coding downstream 95087 5465934 ~ 5466256 (-)
G241521 NA non-coding downstream 102646 5458460 ~ 5458697 (-)
G241517 NA non-coding downstream 113658 5447290 ~ 5447685 (-)
G241515 NA non-coding downstream 117214 5443826 ~ 5444129 (-)
G241548 NA non-coding upstream 7990 5573773 ~ 5574056 (-)
G241551 NA non-coding upstream 12967 5578750 ~ 5580175 (-)
G241552 NA non-coding upstream 15880 5581663 ~ 5581874 (-)
G241553 NA non-coding upstream 16298 5582081 ~ 5582297 (-)
G241575 NA non-coding upstream 57034 5622817 ~ 5623346 (-)
CI01000055_05338403_05341971 NA other downstream 209166 5338403 ~ 5341971 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other downstream 781075 4743706 ~ 4764067 (-)
CI01000055_03918168_03965674 TCF7L2 other downstream 1595323 3911302 ~ 3966460 (-)
G240975 NA other downstream 1827348 3717651 ~ 3733995 (-)
CI01000055_03616564_03618430 NA other downstream 1941699 3616555 ~ 3618430 (-)
G241646 NA other upstream 276411 5842194 ~ 5847572 (-)
CI01000055_06036788_06037622 CARTPT, CART2 other upstream 470801 6036472 ~ 6037728 (-)

Expression


Co-expression Network