XLOC_010030


Basic Information

Item Value
gene id XLOC_010030
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31090998 ~ 31094580 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021968
CGAAATCTCAATCACGTGTCTCTGATCCCACGATACTTCCCAATCTCATTTAAAGGTATAAAACATTAGTTTCACTGCATTGCACTCTCTACACTACTGCCAGAATTTTCACAAACATGCTGTCTGAGATTAAAACACACTGCTGCTGTAGACATAAAATATATGTAACCCCCGATCTAAACACAGGTGTAGATGTGAAGGAGAGTATCTGAAAAACACGCTGCAGATTACTGGAGCAAACGATGCAAAGCAGCTGACCTTTCAAACTGAAGTGCAGGAATGAGTGTATTAACTGACTCCAGTATTGATAAGGAGCCTCTTCAGAAGTCAACTTCTCTCCCGTCTGAAGCGAAAGACTTCCTGCCACTGCCGCTTTCACAGCCGCGATCAAACACCAGCCTCTCTCAAGTCACTTGGGGAAACTCGGCTATCAAAGAAAGACTTATACCCCCCTTTCACACTTCCTCATCCCCATCCCGTCTCATCCTACGACCCGCCGCTAAAAAGAGTTCAAGTGAAAAACACACAATTAGGCTGAACTTGAGCAGAGACTGATGTGTTAAGTGTCTCTCAGGGGGTGAGTAAAAGGACAGCAAGCGTCTTCTCAAACTCTGATTAAATTAGACCAATGCCGACGAAAGACGTGCTTTAAAATGACACGCACAACTGCCTATTAGACAGAGACAAATGGACGTGGAGGATGTAGTTTGGAGATATATGCTAATTCTGCTGTAATAATCAGCAGGTGTGTCTTCTTAATGTCTACCATCGCAGTAAATGTTCAGAGCGAATATTGTCGTAGTACTACATTACCTGCTGTCGATAAGACGAAACAGATTGTGAACAACGAAGACTTTAAAAAAGCTCAAGAATATGCctcttttttttgctgttgttgttttccgAAGAAGTTGATCAAATTATGTTGGAGAAAATGATTCTAATTCTACACATCTGAGGCAGATGGAGGCAGTGGTCCGTCACGATGTGTCTGACAGCAGGGATGTGAAAACTTCCAAGCGCAGTTCAAACAGTTTTGTTGAAGACTTTGATGCGGAGACAGAAAAAGTCTCTTGGAAGCCATTTCCTCTTATGCCACAGATTCCGTTGCGAAACATGCCACCTGAGGACACCAACCGCCTCTATATTTAGAGATTATTGACTCGGTATACATACAATAATGGGTTTATCTCAGGAAATTAAACAGGGATGGatgtatttaaaagaaatatatcTGGGTTGTGTAATTGAGATCACGGTGGCACCATTTGAACCCTCAATGTAAAATCagcatctttctttctttattgcaTTAAGTGATCCTTCCACTATGGCCCTGCTTAGACctggtacactcaaaaaatggatCAAAAATTGgtccaaagaatgtaactatgtttaaactaaacaattcatttatgtttgtCTATTACAACCACAGTTGTGTTGGATAAAAATTtaagttttaacaaatttaaaaagcttgcttaattaaaatgaatgaaagcaaagagcatagaattaccaataggcaacactcaatagaacgttccattgcaacagcagtgcccagcaacaggcccggattccgccattttggagtgaaagcgatcggctgtccattggattttattgctgtcgcgatggcaagcagctgctttgttttttatttatttatttaaagagcgcattaaagctgagatacaacctgaaagacgacaatacaacacttactatcacaatcatcagcacatttaatagtttattttacagacttataataagCTGTTTTGTTggaattttcatttcaaaatggccACCGTGCCATCTAGTGGATGTTttccaaatcgcactagagtgtcgcttcatggtgattctatgctctttgatgaaagggagttgtgttgcttc

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0021536 diencephalon development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0055001 muscle cell development biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007418 ventral midline development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021968 True 1911 lncRNA 0.40 2 31090998 31094580

Neighbor

gene id symbol gene type direction distance location
XLOC_010028 gstk2 coding upstream 84309 30933044 ~ 31006689 (+)
XLOC_010029 BX510336.1 coding upstream 119841 30970501 ~ 30971157 (+)
XLOC_010027 fam210ab coding upstream 478268 30604387 ~ 30612730 (+)
XLOC_010026 mc2r coding upstream 513862 30575901 ~ 30577136 (+)
XLOC_010025 pear1 coding upstream 570841 30438041 ~ 30520157 (+)
XLOC_010031 NA coding downstream 27176 31121756 ~ 31135431 (+)
XLOC_010032 scxb coding downstream 302067 31396647 ~ 31402154 (+)
XLOC_010033 ndrg1b coding downstream 417159 31511739 ~ 31517227 (+)
XLOC_010034 SLA coding downstream 448065 31542645 ~ 31547800 (+)
XLOC_010035 CR855311.5 coding downstream 539890 31634470 ~ 31634595 (+)
XLOC_010024 NA non-coding upstream 760117 30329863 ~ 30330881 (+)
XLOC_010021 FP103008.1 non-coding upstream 1010337 30080543 ~ 30080661 (+)
XLOC_010019 AL928927.1 non-coding upstream 1182028 29903644 ~ 29908970 (+)
XLOC_010018 NA non-coding upstream 1277746 29721627 ~ 29813252 (+)
XLOC_010041 NA non-coding downstream 866328 31960908 ~ 31985059 (+)
XLOC_010047 NA non-coding downstream 998132 32092712 ~ 32095684 (+)
XLOC_010052 NA non-coding downstream 1184419 32278999 ~ 32365571 (+)

Expression


Co-expression Network