G241575


Basic Information

Item Value
gene id G241575
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 5622817 ~ 5623346 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU274160
TTGATTTATATTAAATTTTCTTTAATGTGCACAGCATTATGTGATTTTACAGTAAAAGCAAGGAAAGAGAATTTCAGTTTTCATAAAAAAATACGATCTCATCTACAGAGGCAGACTCATTGAAGCAAATGCATCGCAATAGATACTAAGACAGCAGGTAGACAAAGTCAAAGCGGGTAGACAAAGGGTGACAGAAGTGAGCATAATGTCAGTACAAAATACTATATAAACCCCACTTTAGCAGCAGCCTCTGATGCTGGAAACTTTGGTTTGCTGCCAGTCTTTGCCAGTGTGTATGTGTGTGAATGTGAATGTGTGTGTGACAGTGAATAAACAGAGAAGCAGACAGGTTTGTTTACGGGACAAAATTCCAAACCAAATGATGCCACTTTGTATTGCAGAAACAACATTTAAAAAAAAAAAAAATGCAAAAAACGAATTCTTCATCTTTAAAGACTGCAAATAAAGTTTAAGTAAATGTTAAGGCTGTGGTAATGTGCTTTCGTGTTAAAGTTCACGACCTAGCTAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU274160 True 530 lncRNA 0.36 1 5622817 5623346

Neighbor

gene id symbol gene type direction distance location
CI01000055_05575276_05587897 NA coding downstream 34778 5575052 ~ 5588039 (-)
CI01000055_05543598_05551750 NA coding downstream 69805 5543565 ~ 5553012 (-)
CI01000055_05536718_05540416 CBPA1, CPA1.L, CPA1, CPA5 coding downstream 82391 5536678 ~ 5540426 (-)
CI01000055_05527409_05532734 CPA1 coding downstream 90073 5526978 ~ 5532744 (-)
CI01000055_05476481_05514757 POC1B coding downstream 108060 5476481 ~ 5514757 (-)
CI01000055_05700508_05706528 NA coding upstream 77162 5700508 ~ 5707376 (-)
CI01000055_05711945_05712570 NA coding upstream 88175 5711521 ~ 5712668 (-)
CI01000055_05718689_05727278 FBXL13 coding upstream 95320 5718666 ~ 5727278 (-)
CI01000055_05750004_05751342 NA coding upstream 126658 5750004 ~ 5751677 (-)
CI01000055_05752747_05757839 PARIETOPSIN coding upstream 128634 5751980 ~ 5758092 (-)
G241553 NA non-coding downstream 40520 5582081 ~ 5582297 (-)
G241552 NA non-coding downstream 40943 5581663 ~ 5581874 (-)
G241551 NA non-coding downstream 42642 5578750 ~ 5580175 (-)
G241548 NA non-coding downstream 48761 5573773 ~ 5574056 (-)
G241523 NA non-coding downstream 156252 5466310 ~ 5466565 (-)
G241583 NA non-coding upstream 2202 5625548 ~ 5625784 (-)
G241604 NA non-coding upstream 69330 5692676 ~ 5692929 (-)
G241620 NA non-coding upstream 114380 5737726 ~ 5739786 (-)
G241634 NA non-coding upstream 130239 5753585 ~ 5754078 (-)
G241542 NA other downstream 57034 5561343 ~ 5565783 (-)
CI01000055_05338403_05341971 NA other downstream 270640 5338403 ~ 5341971 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other downstream 842549 4743706 ~ 4764067 (-)
CI01000055_03918168_03965674 TCF7L2 other downstream 1656797 3911302 ~ 3966460 (-)
G240975 NA other downstream 1888822 3717651 ~ 3733995 (-)
G241646 NA other upstream 218848 5842194 ~ 5847572 (-)
CI01000055_06036788_06037622 CARTPT, CART2 other upstream 413238 6036472 ~ 6037728 (-)

Expression


Co-expression Network