Gene
RNA
| Item | Value |
|---|---|
| gene id | G241699 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000055 |
| NCBI id | null |
| chromosome length | 6774723 |
| location | 6073927 ~ 6075915 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU274305 | True | 1213 | lncRNA | 0.38 | 2 | 6073927 | 6075915 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000055_06050715_06052886 | NA | coding | downstream | 21041 | 6050291 ~ 6052886 (-) |
| CI01000055_06036788_06037622 | CARTPT, CART2 | coding | downstream | 36288 | 6036472 ~ 6037728 (-) |
| CI01000055_05993097_06007190 | MAP1AB | coding | downstream | 66737 | 5992460 ~ 6007190 (-) |
| CI01000055_05925014_05930723 | NA | coding | downstream | 142016 | 5924962 ~ 5931911 (-) |
| CI01000055_05863574_05870891 | ABHD2, ABHD2B | coding | downstream | 202793 | 5862756 ~ 5871134 (-) |
| CI01000055_06089001_06094491 | NA | coding | upstream | 12867 | 6088782 ~ 6094491 (-) |
| CI01000055_06097127_06098590 | NA | coding | upstream | 21212 | 6097127 ~ 6098590 (-) |
| CI01000055_06100647_06103912 | ACTR6, ARP6 | coding | upstream | 24493 | 6100408 ~ 6103912 (-) |
| CI01000055_06105621_06111696 | GTSE1 | coding | upstream | 29706 | 6105621 ~ 6111696 (-) |
| CI01000055_06113713_06130901 | ATP2B1, ATP2B1A, ATP2B1B | coding | upstream | 37349 | 6113264 ~ 6132542 (-) |
| G241717 | NA | non-coding | downstream | 7477 | 6066148 ~ 6066450 (-) |
| G241652 | NA | non-coding | downstream | 113160 | 5960137 ~ 5960767 (-) |
| G241688 | NA | non-coding | downstream | 128416 | 5941292 ~ 5945511 (-) |
| G241678 | NA | non-coding | downstream | 166275 | 5907430 ~ 5907652 (-) |
| G241656 | NA | non-coding | downstream | 220456 | 5853049 ~ 5853471 (-) |
| G241719 | NA | non-coding | upstream | 10412 | 6086327 ~ 6086577 (-) |
| G241711 | NA | non-coding | upstream | 14474 | 6090389 ~ 6092031 (-) |
| G241741 | NA | non-coding | upstream | 85237 | 6161152 ~ 6163026 (-) |
| G241743 | NA | non-coding | upstream | 116251 | 6192166 ~ 6193902 (-) |
| G241738 | NA | non-coding | upstream | 128596 | 6204511 ~ 6221146 (-) |
| G241646 | NA | other | downstream | 226355 | 5842194 ~ 5847572 (-) |
| G241542 | NA | other | downstream | 508144 | 5561343 ~ 5565783 (-) |
| CI01000055_05338403_05341971 | NA | other | downstream | 721750 | 5338403 ~ 5341971 (-) |
| CI01000055_04744063_04763284 | FAM19A5, FAM19A5B | other | downstream | 1293659 | 4743706 ~ 4764067 (-) |
