G240319


Basic Information

Item Value
gene id G240319
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6086825 ~ 6086887 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272705
CGCAGATGTAACACTCTGCTGATCTTTTCAAAGCGTCCAAAGGGCAATATGACACATTAGCAAGTTGTGTTTGGCTGAGATCAGAATAATCACTGGGAAATGGCCAACCCACTCCGAGCAGAGGTAGTGCAACTGTACAAAACTTTGCTGTTTCTTGGACGGGACTATCCAAAAGGAGCTGACTATTTCAGACACAGACTGAGGGCTGCTTTTGCCAAGAATAAAGATGTGCGAGACCCAGAGAAGATCAAAGAGCTCATCAGCCGAGGAGAATTTGTGGTGAAAGAGCTCGAAGCGCTGTATTACCTCCGGAAGTACAGAGCTTTGAAGCAACGATATTATGAAACAGAGTGAATAAAATCTCATGCTGCGCGTGCCTGTCATTTACATAAACAATAGCGATAGTATGACTGTAAACAGCTACATGTATAATTTATTCTCCTAATTACATTACAAAAATTGTCATTATTACAATAAAAAACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU272705 True 63 TUCP 0.41 1 6086825 6086887

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024045 lyrm5b coding NC_007136.7 CM002909.2 19557628 ~ 19561261 (+)
eurasian perch (Perca fluviatilis) G183363 NA non-coding NC_053129.1 CM020926.1 9976596 ~ 9976804 (+)
tiger barb (Puntius tetrazona) lyrm5b lyrm5b,LOC105913449,LOC108416767,LOC103042445,LOC103379721,LOC103369417,LOC107716690,LOC107753553,LOC107574601 misc NC_056723.1 CM032092.1 9255047 ~ 9256941 (+)