G241743


Basic Information

Item Value
gene id G241743
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 6192166 ~ 6193902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU274376
NNGAACTCTAAGGAAAAACAACAGTAAATTCAAAGTTGTAGCATGTTTGGAAATATACTGACAGGATGTCTTTGTACTGTTAAGATGATCACTCCACTCCTTGAATTCAGCCCGGAGCTGGACAAACAAATTTTCCTCACTCATCACTTCTCCTGATGATAAGGAGTTGATTTGATCATTGAATCTTTTTATGGTTTCAGTGAGGAATTGTTTGGCTCCCTTAAGATCTTCTGGTGGTCCAGCCTCACACTCCTTGAGCTCATTCCTCACGTCCCACAACCGATTTTTGATCTGCTCATTGAGCTGTGGCAGTGATTTTTTGATATGATCAACAAGATTCTGAGTCAGCTTGACAGCAAGACATTTAATAGTCGCTTTATCCTCATTCAAGAGGCCTCTGTAGAAAAAGAGAAGACACTTAGTTTAGATGGAGCTTACTTTAAATCGTATAGCCTACTGTAGCTTGATAAACAGGTAATGAAAAAATCATAATGGACAAAGTGAACATCACAAAAATTATGCATTAATAAAGAGTTTTTTTCAAATATGAATTATTCATGAATTATACATTAAATTTATGAATTAATAATAAATATTACATTTTACAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU274376 True 610 lncRNA 0.35 3 6192166 6193902

Neighbor

gene id symbol gene type direction distance location
CI01000055_06113713_06130901 ATP2B1, ATP2B1A, ATP2B1B coding downstream 59624 6113264 ~ 6132542 (-)
CI01000055_06105621_06111696 GTSE1 coding downstream 80470 6105621 ~ 6111696 (-)
CI01000055_06100647_06103912 ACTR6, ARP6 coding downstream 88254 6100408 ~ 6103912 (-)
CI01000055_06097127_06098590 NA coding downstream 93576 6097127 ~ 6098590 (-)
CI01000055_06089001_06094491 NA coding downstream 97675 6088782 ~ 6094491 (-)
CI01000055_06382509_06394200 CNOT4A, CNOT4 coding upstream 187715 6381617 ~ 6394741 (-)
CI01000055_06398757_06405805 NA coding upstream 204173 6398075 ~ 6405805 (-)
CI01000055_06408728_06411800 NA coding upstream 214703 6408605 ~ 6411800 (-)
CI01000055_06494468_06508360 DNM1L coding upstream 300566 6494468 ~ 6508360 (-)
CI01000055_06510823_06511725 DNAJB9, DNAJB9A coding upstream 315323 6509225 ~ 6511725 (-)
G241741 NA non-coding downstream 29140 6161152 ~ 6163026 (-)
G241711 NA non-coding downstream 100135 6090389 ~ 6092031 (-)
G241719 NA non-coding downstream 105589 6086327 ~ 6086577 (-)
G241700 NA non-coding downstream 112481 6034223 ~ 6079685 (-)
G241738 NA non-coding upstream 10609 6204511 ~ 6221146 (-)
G241736 NA non-coding upstream 27347 6221249 ~ 6251148 (-)
G241740 NA non-coding upstream 44738 6238640 ~ 6238976 (-)
G241768 NA non-coding upstream 77830 6271732 ~ 6272337 (-)
G241770 NA non-coding upstream 84820 6278722 ~ 6281855 (-)
CI01000055_06036788_06037622 CARTPT, CART2 other downstream 154438 6036472 ~ 6037728 (-)
G241646 NA other downstream 344594 5842194 ~ 5847572 (-)
G241542 NA other downstream 626383 5561343 ~ 5565783 (-)
CI01000055_05338403_05341971 NA other downstream 839989 5338403 ~ 5341971 (-)
CI01000055_04744063_04763284 FAM19A5, FAM19A5B other downstream 1411898 4743706 ~ 4764067 (-)

Expression


Co-expression Network