CI01000057_00400397_00400972


Basic Information

Item Value
gene id CI01000057_00400397_00400972
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 400057 ~ 401014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00400397_00400972.mRNA
ACACACGACCAAGTGACAGACAGCACTCAAACTGAAGAAAGAATGGCTCCAACTGTTTGCAAAGTGACACAGACGGGAAAGGATAAAACTAAATTGAGGAAACCAGTGGTGGAGAAGATGCGCAGAGATCGCATCAACAGATGCATCGAACAGCTGAAAGTTCTTCTAAAAGCCGAGATAAAAGCCAGCCAGCCTTGTTCTAAACTAGAGAAGGCTGATGTCCTGGAAATGGCTGTCATTTACCTGAAGAACAACACATGGCCACTAACAGCGTCGCCGAATGCAGACGCGCACGCGCAGAGCTACGCGGACGGCTTCTCCATGTGCGTAGAGGAGACTGCGCGATTCCTGTCGCAACAACAGACCACCAAACCAGTTTTAATGGGACGCTTTGACAGAACCCAGCAACCCAAATTGAGCGCTAAATCTGTCTGTGCGCCTGCGCACAAAGACAGCTGTCAGATCACGTCAAAGAACGCCGGAGAGCACGCGCTCTGGAGACCCTGGTGATCTGCATTCATAAAGACATGTCTAATATAGAGAATGGGCTGTTTTCTCTAAGTAAAACTTTGTTTTTATAAAATGTTGATGTAGGCAGCAGCTGTCATGACGCATAGAATGTACAAGTCTACCCCATGCCTGAATCTGAGAGCACAAATCTATTGCTTTACTTAACCTCTGTGGAGATTAACTTAATTTACATATTGTAAAAAAGAGGCCTCTGTCACCTCTGTACGTTTCTGTTGAAATAATCTTTTTAATGAGATTTGTAACCTTTATAGGTGTTAAATCTGTCATATTGATGGAATGTGTAAAATTGTCTCATGTTGAGTTCGATTGAAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00400397_00400972.mRNA True 850 mRNA 0.44 2 400057 401014

Neighbor

gene id symbol gene type direction distance location
CI01000057_00381820_00385585 NA coding downstream 14472 381333 ~ 385585 (-)
CI01000057_00339874_00343207 MRTO4 coding downstream 56544 339811 ~ 343695 (-)
CI01000057_00314025_00331813 NA coding downstream 68244 313546 ~ 331813 (-)
CI01000057_00257594_00301277 NA coding downstream 98549 257571 ~ 301508 (-)
CI01000057_00249540_00251667 NA coding downstream 148286 248773 ~ 251771 (-)
CI01000057_00409300_00412579 NA coding upstream 8154 409168 ~ 412625 (-)
CI01000057_00420698_00421063 NA coding upstream 18972 419986 ~ 421063 (-)
CI01000057_00459703_00467870 ABHD6A, ABHD6 coding upstream 57929 458943 ~ 467870 (-)
CI01000057_00475661_00476027 NA coding upstream 74378 475392 ~ 476027 (-)
CI01000057_00534471_00559759 NA coding upstream 132574 533588 ~ 559759 (-)
G244264 NA non-coding downstream 91000 308786 ~ 309057 (-)
G244180 NA non-coding downstream 226299 171156 ~ 173758 (-)
G244178 NA non-coding downstream 232870 165598 ~ 167187 (-)
G244157 NA non-coding downstream 253597 145357 ~ 146460 (-)
G244304 NA non-coding upstream 4569 405583 ~ 405973 (-)
G244305 NA non-coding upstream 6206 407220 ~ 407829 (-)
G244287 NA non-coding upstream 12898 413912 ~ 415609 (-)
G244338 NA non-coding upstream 78929 479943 ~ 480154 (-)
G244358 NA other upstream 169516 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 1400570 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 1519042 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 3490721 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 4527730 4927533 ~ 4931420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004344 her2 coding NC_007122.7 CM002895.2 41966117 ~ 41966854 (-)