CI01000057_01145522_01147560


Basic Information

Item Value
gene id CI01000057_01145522_01147560
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1144062 ~ 1147772 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_01145522_01147560.mRNA
ACTTGCAATCTGTGTTGTGCCTCATTTGCTTTACAGAAGCTTGTTCTAGATTACAGCCAGTCTGAAGAGGACACAGGTTTCAGTGGAGAAGACATTTTATGTGGACCATTGTCTTCAGAGCTTTCCTTCCCATGACATGGCCAAGAATCTTGTCGACAAACTCTACAGCCTTCTAGCATCTGGTGGCTTTGATCTACGACAGTGGGCTAGCAATGACCCTTCAGTTATCAGCCATCTGCCAGCTGATATTCAGTCTCAGAGCAGCATCCTCTGGCTCTGTGAAAGTCACCAAGAGGCCCCAAAATCAGCTCTTGGCCTACATTGGAATTGCCAATCAGACATCCTCTTGTACAAACAACGCAAACCAGACTGTCAAGTGCCCACAATGCAAAGCATCTATCAAATCCTTACTAGCCAATCCTCAGCAATTTCAGACCTTCACAGACTTCCTAAAGGCCCTTATACAACCACAAAACAAGAGCTCTCCCTCCATTGCAACTGCAGAAGATTATAAAGAAGCAGAGCTCATGGCCCTCAGTCAGATCCAAGACAAGTCATTTCCTGAAAAGATGTCCTACTTGAAATCTGACATTGCTGACCCAGTTCCAGTTACACCCAACATCCTGTTAATGGGGTGGCGAGATGCCTCACTTCCACAAGTGACATACCAGGATCCTGAACTACTGAGCTGAACAAGATGGAGACAAGATCAGCTACTAGCTGATCACTTTTGAAAACAATTTATCCATAACTACCTACCTAACCTACAAACCAGACAGAAAAGGATGTCAGAAAAGGACAATATACGAATAGGTGAAACTGTTATGATTGTGGACCAGCAGCTACCTCATGTACTTTGGCCTGTTGGAAGGATTATTCAGGTTTACCCTGGAAAAGATAACAGGATCAAATCAGGGTGGGGGGTGGGCGATATACCAGTAGACACGATTAACCAGTAGAAATTTGTCAACCTGTATAAATTTTGGACTATTGTCTCTATTGCGGTTACACTCGTGTGATGTACTTGTGCTGCACCATACATTCAAAGCTTGTCATTTGAACGTGTTTTAAGCCTTTTAAGCCTTTAAATCATTCAATCGCAATAAGTAGTGAAAGATGACTCATTTCGGTATATGCTTGCTTTGTCTAAGAGACTGTTTCTGAGCGCTGTGAGATTCATGCGCACATGAAGGCGCTGCTCATACAGCGCGTGAGTTTTGAACTGAGTTGTTTTTGGCACCTTATTAGGCTTGAACGGTCAATACACATTTGTATGTGCCAAAATGCCCGTCATTGTGAGTATTCTTGTAAACAAAGTAGTTCATGTCTTAGGTGTATGTAAACAGTTGAGAAATGTGCATATGAATCAGTAGGCTTTATTAAATCAGTGCATTCGGTCTTAAAGTGACAGCAGCCTAATAAACCTGCTGCTGTCTGTGCCATTTAATTTTAATCAGACAATCTCATTGCTCTTGACTGAATAGGTTTTGTAACTTTAATAAGAATAAATGTATATTTCATTTGCACAGTTATGCAGTGTTGATGTACATGTGACTACTTCATACAGTTTATGTAGCTATCTAGTTCTTGAAGTTTTTCAGGTAGGTCTATTTAATTTGTATCTTTGTTATATTGTAGTTTTTGTCCTATTGCTTGTAATTAGTTTCTTTGTTCATATTTTACTAATTTATCTATGACAGTTTTCTTGTCTTCTGTGAGCTTGATGTTTTTTTTTTTGATGGAATTACAGAGCACACAGCAAATTACATATTCATCTAAATGCTGCTTCCAGCAGAGAGGTTGGCATCGGGATGTTTGCTAACAGTAAAAACTGCAAAGATATTTAGAATTTCTTCTTACCCCTATGCGAAGAACGAAAAAGAACTTTCACCATGAGTATATTGGGGCCTTTAGACTCATTGTCATATAGAATCTTTATTTTTAATATTAAAAATAATATAGTTAATTATGATTGGAATTATAATATTGCAATTATTTTTGGAAATTAAAATACATATCAACAATAGCATCTGATCCTTGACTTTATACCTTGGGATCTAATTTGCTTTTTTGGACTTTTTTTCCAGTGCATATTGCAGACCTTATTACCAAATATCCATAACTGCTACTTGCCATAAGAGATTAAAATAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_01145522_01147560.mRNA True 2152 mRNA 0.38 3 1144062 1147772

Neighbor

gene id symbol gene type direction distance location
CI01000057_01083731_01092073 NA coding downstream 51431 1083714 ~ 1092631 (-)
CI01000057_00956994_00965947 NR1D4B coding downstream 178115 955633 ~ 965947 (-)
CI01000057_00938618_00949690 NA coding downstream 194283 938071 ~ 949779 (-)
CI01000057_00873279_00873578 NA coding downstream 270484 873274 ~ 873578 (-)
CI01000057_00628126_00628851 NA coding downstream 513896 627715 ~ 630166 (-)
CI01000057_01189209_01190703 SMUG1 coding upstream 41141 1188913 ~ 1190703 (-)
CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding upstream 71658 1219430 ~ 1223491 (-)
CI01000057_01235433_01244747 NA coding upstream 87405 1235177 ~ 1245182 (-)
CI01000057_01252690_01256408 ZNF740A coding upstream 104875 1252647 ~ 1256408 (-)
CI01000057_01261251_01262315 NA coding upstream 112914 1260686 ~ 1262315 (-)
G244524 NA non-coding downstream 115034 1008238 ~ 1029028 (-)
G244522 NA non-coding downstream 142715 1001123 ~ 1001347 (-)
G244516 NA non-coding downstream 192055 951714 ~ 952007 (-)
G244379 NA non-coding downstream 208203 933900 ~ 935859 (-)
G244475 NA non-coding downstream 272065 871777 ~ 871997 (-)
G244594 NA non-coding upstream 17404 1165176 ~ 1167492 (-)
G244558 NA non-coding upstream 45173 1192945 ~ 1193239 (-)
G244606 NA non-coding upstream 48800 1196572 ~ 1196835 (-)
G244548 NA non-coding upstream 60726 1208498 ~ 1210749 (-)
G244610 NA non-coding upstream 115255 1263027 ~ 1263250 (-)
G244358 NA other downstream 573034 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 653812 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 772284 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2743963 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3780972 4927533 ~ 4931420 (-)
G246780 NA other upstream 4063338 5086312 ~ 5283617 (-)

Expression


Co-expression Network