Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000057_01356170_01359401 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 1355409 ~ 1359970 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| gag polyprotein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000057_01356170_01359401.mRNA | False | 2080 | mRNA | 0.46 | 2 | 1355409 | 1359970 |
| TU277731 | True | 602 | lncRNA | 0.42 | 1 | 1355440 | 1356041 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_01261251_01262315 | NA | coding | downstream | 93094 | 1260686 ~ 1262315 (-) |
| CI01000057_01252690_01256408 | ZNF740A | coding | downstream | 99001 | 1252647 ~ 1256408 (-) |
| CI01000057_01235433_01244747 | NA | coding | downstream | 110227 | 1235177 ~ 1245182 (-) |
| CI01000057_01219430_01223491 | HNRNPA1, HNRNPA1A | coding | downstream | 131918 | 1219430 ~ 1223491 (-) |
| CI01000057_01189209_01190703 | SMUG1 | coding | downstream | 164706 | 1188913 ~ 1190703 (-) |
| CI01000057_01471460_01487413 | NA | coding | upstream | 111157 | 1471127 ~ 1487762 (-) |
| CI01000057_01542990_01546030 | SLC2A10 | coding | upstream | 182827 | 1542797 ~ 1546030 (-) |
| CI01000057_01559593_01572133 | NA | coding | upstream | 199577 | 1559547 ~ 1572850 (-) |
| CI01000057_01707526_01708449 | NA | coding | upstream | 347525 | 1707495 ~ 1708449 (-) |
| CI01000057_01801708_01806454 | LHFPL5, LHFPL5A | coding | upstream | 441558 | 1801528 ~ 1806454 (-) |
| G244637 | NA | non-coding | downstream | 25063 | 1329775 ~ 1330346 (-) |
| G244636 | NA | non-coding | downstream | 28552 | 1326491 ~ 1326857 (-) |
| G244635 | NA | non-coding | downstream | 29196 | 1325721 ~ 1326213 (-) |
| G244634 | NA | non-coding | downstream | 29826 | 1325303 ~ 1325583 (-) |
| G244633 | NA | non-coding | downstream | 32173 | 1322855 ~ 1323236 (-) |
| G244652 | NA | non-coding | upstream | 27497 | 1387467 ~ 1388580 (-) |
| G244675 | NA | non-coding | upstream | 83228 | 1443198 ~ 1443529 (-) |
| G244702 | NA | non-coding | upstream | 84052 | 1444022 ~ 1444797 (-) |
| G244703 | NA | non-coding | upstream | 85815 | 1445785 ~ 1446353 (-) |
| G244706 | NA | non-coding | upstream | 88373 | 1448343 ~ 1448682 (-) |
| G244358 | NA | other | downstream | 784381 | 570530 ~ 571028 (-) |
| CI01000057_01904867_01921400 | NA | other | upstream | 560086 | 1904533 ~ 1921905 (-) |
| CI01000057_03887278_03892054 | ABHD8B, ABHD8 | other | upstream | 2531765 | 3887203 ~ 3892054 (-) |
| CI01000057_04927533_04931127 | CDK4 | other | upstream | 3568774 | 4927533 ~ 4931420 (-) |
| G246780 | NA | other | upstream | 3851140 | 5086312 ~ 5283617 (-) |
