CI01000057_02200951_02207673 (CDK2.S, CDK2, MGC81499)


Basic Information

Item Value
gene id CI01000057_02200951_02207673
gene name CDK2.S, CDK2, MGC81499
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2200580 ~ 2207673 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02200951_02207673.mRNA
AGAAACTGAAGGTGTTCCCAGCACTGCCATACGTGAGATCTCTCTGCTAAAAGAGCTCAATCACCCAAACATAGTCAAATTGCGTGATGTGATACACACAGAAAATAAGCTTTACTTGGTGTTTGAATTTCTTCACCAAGACCTGAAGAGGTTTATGGACTCATCCTCTGTTTCTGGCATATCTTTGCCACTCGTGAAGAGTTACCTGTTCCAGTTGCTCCAGGGATTGGCCTTCTGTCACTCCCATCGGGTTCTTCACAGGGATCTCAAACCCCAGAATCTCCTGATCAATGCTCAGGGCGAGATCAAACTGGCTGACTTTGGTTTGGCCAGAGCATTTGGTGTACCTGTACGGACTTATACACATGAGGTGGTAACTTTGTGGTACAGAGCTCCAGAGATTCTCCTGGGATGTAAATATTATTCTACAGCTGTTGACATCTGGAGTTTGGGCTGCATCTTTGCTGAAATGATTACTCGGAGGGCATTGTTTCCTGGAGACTCTGAAATAGACCAGCTCTTCCGAATATTTCGAACACTGGGCACTCCGGATGAATCTATATGGCCTGGAGTCACCTCAATGCCAGACTACAAACCCTCCTTTCCCAAGTGGGCACGACAGGACCTGTCTAAAGTGGTGCCTCCTCTGGATGATGATGGCCGAGACCTCCTTGCGGTAAGAGGGCAACAAAGTTTATCTAGTATCACAGCCTGACTGGGGTTGGTGAAGCTGCTTTGTTGTTAACATTTATTGAGCTGCTTGTAGTTTGGCAGGATGCAATCAAGCACTACACTACAGCAAAAACTACTAGCCTAATTAATGTCAATTTAAAACATTATTAAAGACAAGTAAACAGTAATAAAATAAGAACAAATAATCCAATTACAAATAGCACAAATACAACAGAACAAAGATACAAATGAAATAAACAAGTGTTTTTCAGGTACATGTTTTAGTAATCAAATGTAAAAATAACACAGTATATAATCTTCACTGTATAAATTAAATATAGATTATTCTTTATTAAAGTTACCAAAGTCATGCATGTAACAGACCATTTGCGCCGTGCACACAGTAAAATTAAA

Function

symbol description
cdk2 Predicted to enable cyclin binding activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in several processes, including G1/S transition of mitotic cell cycle; protein phosphorylation; and regulation of G2/M transition of mitotic cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in prostate cancer and renal cell carcinoma. Orthologous to human CDK2 (cyclin dependent kinase 2).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process

KEGG:

id description
K02206 CDK2; cyclin-dependent kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02200951_02207673.mRNA True 1086 mRNA 0.41 5 2200580 2207673

Neighbor

gene id symbol gene type direction distance location
CI01000057_01904867_01921400 NA coding downstream 278675 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A coding downstream 394126 1801528 ~ 1806454 (-)
CI01000057_01707526_01708449 NA coding downstream 492131 1707495 ~ 1708449 (-)
CI01000057_01559593_01572133 NA coding downstream 627730 1559547 ~ 1572850 (-)
CI01000057_01542990_01546030 SLC2A10 coding downstream 654550 1542797 ~ 1546030 (-)
CI01000057_02248495_02254279 NA coding upstream 40673 2248346 ~ 2254318 (-)
CI01000057_02258394_02291730 ACAP3B, CENB5, ACAP3 coding upstream 50721 2258394 ~ 2291730 (-)
CI01000057_02374706_02384095 DDX19A, DDX19B, RP11-529K1.3, DDX19 coding upstream 166876 2374549 ~ 2384849 (-)
CI01000057_02401903_02408835 NA coding upstream 194147 2401820 ~ 2411148 (-)
CI01000057_02421510_02433767 NA coding upstream 213551 2421224 ~ 2433767 (-)
G244930 NA non-coding downstream 29847 2170362 ~ 2170733 (-)
G244928 NA non-coding downstream 42460 2157913 ~ 2158120 (-)
G244916 NA non-coding downstream 52476 2122725 ~ 2148104 (-)
G244922 NA non-coding downstream 65331 2134674 ~ 2135249 (-)
G244915 NA non-coding downstream 86426 2113945 ~ 2114154 (-)
G244939 NA non-coding upstream 1257 2208930 ~ 2209229 (-)
G244963 NA non-coding upstream 27142 2234815 ~ 2235090 (-)
G244941 NA non-coding upstream 39740 2247413 ~ 2247724 (-)
G244949 NA non-coding upstream 132458 2340131 ~ 2341614 (-)
G244971 NA non-coding upstream 140814 2348487 ~ 2348796 (-)
G244358 NA other downstream 1629552 570530 ~ 571028 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 1684062 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 2721071 4927533 ~ 4931420 (-)
G246780 NA other upstream 3003437 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 3715867 5923540 ~ 5927295 (-)

Expression


Co-expression Network