XLOC_010060


Basic Information

Item Value
gene id XLOC_010060
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33058899 ~ 33063159 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021973
CAGCATCTCCATTCCACAATACTGACACCAACACAGCACCACAGGCCTTTCTTACCCATCCACTGCTATCGGATGACCTTTGAAGGAGCCATTGCGCGAACAACATGATAACCAAAATGGGTAAACCATTACTGTGTGGACAGTGAAAGTGCAGGTCACGTTTTGATGAGGCCCTCGAGGAAGTCCTTCTCAACCATTTCCTCAATGTTCTGTCTGGCCCGGCTCCAGAAAACTTTCTGGCTCTCCAGTTTGCCATCCTTGCCAGGGAATGGTCCGTCTCTGGGAGTAGGGCTGTGAAATGGTCCTGAGCGGCTGTTGCCTTTGCTGCTGAAGTCCTGGCTGAGGAGGTTGAAGAAAGGGAGGAGCTGCTCCATGCTGCGGATCACGTAAAGGGTGAGCAGAAGCTGTCCGGGCTCCCAGGACAAAGTGCGTGTGGAGCAGTCTTCCTCTGGGTTTTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021973 True 459 lncRNA 0.53 2 33058899 33063159

Neighbor

gene id symbol gene type direction distance location
XLOC_010059 prss35 coding upstream 54047 32995882 ~ 33004852 (+)
XLOC_010058 prdm13 coding upstream 302999 32749591 ~ 32755900 (+)
XLOC_010057 zgc:172323 coding upstream 314641 32736588 ~ 32744258 (+)
XLOC_010056 si:dkey-165n16.1 coding upstream 324134 32729223 ~ 32734765 (+)
XLOC_010055 CR848729.4 coding upstream 385963 32672820 ~ 32672936 (+)
XLOC_010061 cnr2 coding downstream 46337 33109496 ~ 33119626 (+)
XLOC_010062 akirin1 coding downstream 57947 33121106 ~ 33141934 (+)
XLOC_010063 rhbdl2 coding downstream 79575 33142734 ~ 33154518 (+)
XLOC_010064 rragca coding downstream 100699 33163858 ~ 33179119 (+)
XLOC_010065 NA coding downstream 116947 33180106 ~ 33214537 (+)
XLOC_010053 CR533571.1 non-coding upstream 549441 32397507 ~ 32509458 (+)
XLOC_010052 NA non-coding upstream 693328 32278999 ~ 32365571 (+)
XLOC_010047 NA non-coding upstream 963215 32092712 ~ 32095684 (+)
XLOC_010041 NA non-coding upstream 1073840 31960908 ~ 31985059 (+)
XLOC_010066 NA non-coding downstream 187331 33250490 ~ 33293780 (+)
XLOC_010067 AL954832.1 non-coding downstream 279992 33343151 ~ 33343265 (+)
XLOC_010070 BX530064.2 non-coding downstream 688943 33752102 ~ 33756379 (+)
XLOC_010080 NA non-coding downstream 1252603 34315762 ~ 34321379 (+)

Expression


Co-expression Network