XLOC_010061 (cnr2)


Basic Information

Item Value
gene id XLOC_010061
gene name cnr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33109496 ~ 33119626 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019998
CATCCAGCAGCTGCCACGTGATATAAGTACATTTGTGTAATAGGGCAGTATGAGGAAGATGTGGTGAGAAGAAATGTTTCAGCATTCATTACACGATGATTTTTCTTGATGAGAGACTAAAGTTCCTCAAAAAATAACGGGTTTGGTGTTTTCCATCGGTTACTTTTGCTTTGCTCAGTAATGTCATTTTAATCTTGTGAATTTCACTTCTGCACATCCAAGATGAAAGCGTCGTAGCTCATATTATAACAGCTGGGGATGTTATAGTGAAATTTTGGCTCTATCTTTCTGAGGTGGGGGGTGTGATGTGTTCTCTATTGTTGAAATCAGAGACAGAAAAAGAAGACTTGTGAAAGACAACGGCTCTGAAATATTAACCTGCATCAACAGCAAAACACAAAGATCAGTTTTGCCCAGGGGAAAATGGAGAACAAACTGGAACAAGATCAAGAAGCTACGACTGTGCTTTACTCAAATTTGAGTACACAGAACATTTCAACCACAGATAAAAGCTTATGCAATAGCCTACAGTGCTACATGGTTTTGACCACACAAGAGCAGAAAGCTATCAGCTCAATTTGCTTTCTAGCCGGCCCAGTGACTTTCCTGGCGAACATTTTGGTCCTGCTGACCATTGCAAGCTCCACAGCACTGCGCAGACGCCCATCGTACCTGTTTATCAGCAGCCTGGCACTGGCCGACATGTTTGCCAGCTGTTTCTTCACCATCAGTTTTCTAGATTTCCATCTTCTCAGTCAGAGAGACGATGCTAACCTCTATCTCTTCAAGCTTGGTGGCGTCACAATGGCGTTTACGGGCTCTGTGGGAAGCCTTTTGCTGACAGCGCTGGACCGATATCTTTGCATCTACCAGGCTTCCAATTACAAGCTGCTACTGACACGCACTAGAGCCAAACTGGCCATATTATTCTTATGGTGTGTGACGATTATTCTCTCATTCCTCCCTTTGATGGGGTGGAGGTGCAAAACCTGGTTGGATCGTCCATGCTCACGTCTCTTCCCGTACGTGGATCGTCACTATTTGGCCAGCTGGACGGGTCTGCAGCTTGTGATGCTTTTTCTTATCATAGTGGCTTATGCTCTTATCCTGTGGAAAGCAAATCGCCATGAAGCAAATATGGGTGGACCAAAGTTAGGGAGGCAGAGCGTGAAAGGACAGGCTCGAATGCGAATGGACATTCAGCTCGCACACACTTTTAGTTTGATCCTTCTAATCCTGGCGATCTGTTGGCTGCCCGTCCTGTCCTTTATGGTAGTGGACGTCAGAGTGACCCTGACAAACAAACAACAGCGAATGTTCGCTTTCTGTAGCACACTGTGTCTGGTGAACTCTTGTGTAAACCCTCTTCTCTATGCCCTGCGCTGCCGAGAGCTGAGGGGAGAAATGCTGGCATTGATAGAATGTTGCAAGGCATGCAGGGAACATGCTTTGGGTCATACTCATGGCCAAATAACTGATAGCAGTTCTGGCAAAAAGAGCACAAATCCGGCAGTGAGTGGTAGTAACCCAGAAATTGTTTCTAGGAGTGCAGACAGGCAGCAAAACAGCATATGAATAATGTCTAAAAGTCATATTTACTTGTCATTTTGTTTATGGAAGCACAATATATTGTTGGCCACAACGATATCGGCCGATATGTACAATATATCGGTTGTCTTATCAGTAAAGACAGATACATTattagttttaatgttattgtttttggCCTGATATAGTAAAGCTGATGAATTGATTTTTTTGTCGATTGATGTATTtaggatgcacaatatattgcttgCCATCAGCCgatatgtaaaatatattgaGGGTCATATAAGTATTGACTGATATATTATTAGCTTTGATGTTATTGTTATTAGCCCAATATATAAAAGCTAAAAAATCATAGATTTTTTTTGCCAGTTGATCTACTTATCAAAGATAAGATTCACAATATATCGTTTGCCCTATAGTATCGGCTGATATTTACAATATGTCAGTTGGCATATCAAATCAAATATAAGTAATAACTGATAAATTATTAGCTTTAATGTTATTGGCCCGATATAGTAAAGCTGATAAATGATGGATTTCTTTGCCTGTTGATCTATTTaagatgcacaatatattgcttgccatatcagtatcatctgatatgtaaaatatattgtttgCCATGTCAGTATCGGCCAATATGTACAATATATTGGTGGTCTTATCAGTATTGACTGATATATTATTAGCTTTATTGTTATTGGCCGAATATATAAAAActgagaaacattttttttttttggcatttgatCTACTTATCAAAGATAAGATGCAGAATATATTGATAGCCATATTAATATTGACTGATATGTACAATATATCAGTTGTTATATTAGTACTGACTGATACTTTattagttttaatgttattgttattggcCCTATATATAACTGCTGATAAATTTTGGATTATTTTTGGCGGTCAATCTACTTaaaatgcacaatatatcggttaCCATATCAAATATATTAACCgataaattattataatgaatTCATCTTtctttctatagtgctttttacaatgtagaatgtgtcaaagcagcttaacgtagaTGAAGAACAAATAAAAGCccataaaatattacaaactatGAAATATTCAGGCAAGTCATGCAGGAAGAAGAGTAGTTTAGCCGCATGATGTAggtctagtaaattaaaactgattcagttcagtttggtATATGTGTCattgttgaagttcagttcagtttcatTCGGATGCTTTGTAATGCAAATAACACTGCTGAAGGCCGATCCACTGAATAGCAAATCCACTCCCAACCAGTGAAGCCAGAGGTGGCAGTTGCAAGGAACCAAAATTACACCagttgacgaaagtgaagaacaAACCTCAGGAGAAACCAGCCTCAGTCAGGGCGACCAGTTCTCTTCTGGGTATGTACAATATACAGGTGTCATAATGaccaataaattattaattttaatgttaCAGGCCTGTTATATTAAATGTGATAAATGATAGATTATTTCTGTCAATTGATCTTCATAAGATACACAATATATCGGTTGCCATATCAGTATTACCTAAAAATTATTATGCTTAATGTAATTGTTACTGGCCCAGTATTTTAAAGCAAATGAATGATGGATTATCTGTGTCGGATGGATGGCAGTTTATCTACTTAAGATGTATACTGCTGGCCATTATGATATGACTGGTGCCTTTACCATTATGTGTCATGTAAATACACCCTAAAAGATTTATGAAAAGAAAAATAAGATCTTGGTCATATTTGtcactgtggaaaaaaaaacaccatgtcAACTTGTAAATGATTCTGAGAAAGGAAAGCTATATGTTGTTGGAATCTGCCATCTTCACATATGAGAGGGCGCTGCCATCGGAATTTATTTGGGCTTGACActttcggtctcattcacttcctttGATTTTTAGCTGTTAGCTAATTATGCTGATTGATGCTGCAAACTGATATGTCCTTATTACATTTTTCTTCTGTTATaaatagtcatgaacacacttgtttgtaggtTTGACCATTTTCTCCCATTTAATATTCCTATAGGACCATAGTGTctatagtcatttctcccatgcAGGCAACactaaatcggaagttctaaaacaatcacgaaATTGAACGCACTTCCACACTGAAGAACAAAGTCAATAGGGTTTTGAAATAATATCAGTTACCAGTGGTATTGTTTGCATTTTGGTTTATGTAGTCAAACTTATAAAAACTGAGATGGAACTATATAGGCATGTATATTGGCTTCACCAGAAATGTCCATatggtgcatccctaattttgTTCATATTTCTTATACAAATTATTTGAGATTCTTAAATTCAGTTTTACAGATGAgaagctgaaataataaaaaaaaattgtctagtTTTTGATGATACATTGTGCCTTCACATTGCGCATTGTATTGTAATAAGTACAGTATATTAAAATTAGAATATGAAATGAACAGAGCAGATTACTAATAAGAACTTAAACTTATGTAGTGTATACAAGATTTTAGCTTCAACGAGTCATCAATTTGAACATTTTGTAAACAAATAGAATctgaaatagggctgcacgatattgaaaaaatcaaacattgaatttttttttattctgtgatatatattcCGATTATGTAGACAATTTCACCAAATGACTTGAATACCTATTTTGGAAAGAATTATAATTTACGacaaaaatatcataaaatattataaacaaatctaCAAACATAGATAAactcaataaagaaaaagatacaaattaaataaacagcattttactGTATTAAGcaaacagtaattgaataatcaaatgtaaaatacaattgCATATTCTATGTTgtgtaaacaattcaataaaattaatcattattaatttttcaaagttacaaatggtcaatttaaaaaaaatgtttttatacttttaaaatccTCACAGTCAGAGCCCCTTTAAAAAACACTTGCGAAGTGATAAATTATAATCCAAGACACAACGTTGCAAACAcgtgcaatgtgactattgcgaatgatcacattgctgaaaagatatattgtgcagccttaatctgacaacatatatttattgtttattaatatgcAATAAGTCGGTGCTTAGTAATATTGCTATTCTGGTCTGGTTTCGTTATTTCCCTAAACACCTTTATACTTACTAAACAGACTCAGAACAGCTGACTCATCTGCTTCAATTTCATCCAAGCATAAAAGAAGCCATGTATATATAGATTACACTGTGAAACAAAACACCCTTCAGCGTTATTGATGACTAGAAACTAAAACTTtgcttccttttttaaatatatgcttcATGATTTGTAGCACCACAGCACAATCTGTGGCTTCATCACAGTTCTCAGTCTTAAAACTTATctatggtaactgttatgatacACTAAGGCTTGAGTATATGTTTTAATGATACTTGGCAAAGAGAAAAGACTGTAGAATACATCTTGAATGGACTTTGATAAGAGTCTGCTaagaatttaaaatgctttaatccTGAATTTTGCTTATTTTAGAACAGAATATCTTCTGCATCACTTGTATACATTTGTGAGttataataaaatactgtaactgTGGTATAGTTAAACTAATTCATTGAGTAAAATGTATGTTAATTAATGTCAAATGGTTGTAAAATTTGTATACGTTTGTATAGTttttcatcaatttatttatgcttttgtatCGCACAATGGAACCTTGTTGCTTTAATTGACATTTAGGTATGAAATTATATTGTCCAGGTTGTCGCTTTTCTGTTATTTCCTGGATTTATTTAATGGATTTTATGATGCATCAATAAAACAATTTCTGCATACCAGCACTCACTTTCTTGAAATCCTTagaattgtaaggttctatctgaaatttttgtcaaaattatggTATTCACACTTTCTTAATAAATGAAAACTTATCTgaagttgtttacatttgaagactactttttttttttttttacaaaaataaaaaaggttttatctacaaagtcgaactctagctttgctctataaggttctttctgtgagccaatcggCATTTCGAATGCATGAacaaggaccaatcaggatcagctttctttgtcattccaccAGACTGCtctgttgttaaaaaaatgtatatattatatgtgaaatatttgtatgtgtgtatatatagtcagtgaaacatttttgagtgtgtattattaaactcatttgttcattgtctgtattcttttaaagtctttaaatttgatattaagccttgaagggcaaatacttaatttaattcatggggcatataattcagTAATTCATAAAAagcatataatttaataaatattaccatagtaattaattaaataaaataaacatctgATCAGGACAAAatattaaacaagaaaaaatattcatcctaaaactttaaataaatgtatgtatatatatatatatatatatatatatacagtggatgATTTGCCAGATAGGACCTAGGACCTTTTCATTCCAAgctgaaaatgacattttagaattagaaggttcttTTTTAAgcttttactattatttatttatttatttattataatttgtattgattattattttccatctgtttattttttg
>TCONS_00019999
ATGGAGAACAAACTGGAACAAGATCAAGAAGCTACGACTGTGCTTTACTCAAATTTGAGTACACAGAACATTTCAACCACAGATAAAAGCTTATGCAATAGCCTACAGTGCTACATGGTTTTGACCACACAAGAGCAGAAAGCTATCAGCTCAATTTGCTTTCTAGCCGGCCCAGTGACTTTCCTGGCGAACATTTTGGTCCTGCTGACCATTGCAAGCTCCACAGCACTGCGCAGACGCCCATCGTACCTGTTTATCAGCAGCCTGGCACTGGCCGACATGTTTGCCAGCTGTTTCTTCACCATCAGTTTTCTAGATTTCCATCTTCTCAGTCAGAGAGACGATGCTAACCTCTATCTCTTCAAGCTTGGTGGCGTCACAATGGCGTTTACGGGCTCTGTGGGAAGCCTTTTGCTGACAGCGCTGGACCGATATCTTTGCATCTACCAGGCTTCCAATTACAAGCTGCTACTGACACGCACTAGAGCCAAACTGGCCATATTATTCTTATGGTGTGTGACGATTATTCTCTCATTCCTCCCTTTGATGGGGTGGAGGTGCAAAACCTGGTTGGATCGTCCATGCTCACGTCTCTTCCCGTACGTGGATCGTCACTATTTGGCCAGCTGGACGGGTCTGCAGCTTGTGATGCTTTTTCTTATCATAGTGGCTTATGCTCTTATCCTGTGGAAAGCAAATCGCCATGAAGCAAATATGGGTGGACCAAAGTTAGGGAGGCAGAGCGTGAAAGGACAGGCTCGAATGCGAATGGACATTCAGCTCGCACACACTTTTAGTTTGATCCTTCTAATCCTGGCGATCTGTTGGCTGCCCGTCCTGTCCTTTATGGTAGTGGACGTCAGAGTGACCCTGACAAACAAACAACAGCGAATGTTCGCTTTCTGTAGCACACTGTGTCTGGTGAACTCTTGTGTAAACCCTCTTCTCTATGCCCTGCGCTGCCGAGAGCTGAGGGGAGAAATGCTGGCATTGATAGAATGTTGCAAGGCATGCAGGGAACATGCTTTGGGTCATACTCATGGCCAAATAACTGATAGCAGTTCTGGCAAAAAGAGCACAAATCCGGCAGTGAGTGGTAGTAACCCAGAAATTGTTTCTAGGAGTGCAGACAGGCAGCAAAACAGCATATGAATAATGTCTAAAAGTCATATTTACTTGTCATTTTGTTTATGGAAGCACAATATATTGTTGGCCACAACGATATCGGCCGATATGTACAATATATCGGTTGTCTTATCAGTAAAGACAGATACATTattagttttaatgttattgtttttggCCTGATATAGTAAAGCTGATGAATTGATTTTTTTGTCGATTGATGTATTtaggatgcacaatatattgcttgCCAT

Function

symbol description
cnr2 Predicted to enable cannabinoid receptor activity. Acts upstream of or within several processes, including hematopoietic stem cell differentiation; hematopoietic stem cell migration to bone marrow; and methionine metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including digestive system; gill; heart; hematopoietic system; and nervous system. Used to study anxiety disorder. Orthologous to human CNR2 (cannabinoid receptor 2).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0038171 cannabinoid signaling pathway biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001889 liver development biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0097241 hematopoietic stem cell migration to bone marrow biological_process
GO:0006555 methionine metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004949 cannabinoid receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-040702-7 Predicted to enable cannabinoid receptor activity. Acts upstream of or within several processes, including hematopoietic stem cell differentiation; hematopoietic stem cell migration to bone marrow; and methionine metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including digestive system; gill; heart; hematopoietic system; and nervous system. Used to study anxiety disorder. Orthologous to human CNR2 (cannabinoid receptor 2).

Ensembl:

ensembl_id ENSDARG00000039970

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019998 False 6194 mRNA 0.34 3 33109496 33119626
TCONS_00019999 True 1379 mRNA 0.45 2 33111947 33115234

Neighbor

gene id symbol gene type direction distance location
XLOC_010060 NA coding upstream 46337 33058899 ~ 33063159 (+)
XLOC_010059 prss35 coding upstream 104644 32995882 ~ 33004852 (+)
XLOC_010058 prdm13 coding upstream 353596 32749591 ~ 32755900 (+)
XLOC_010057 zgc:172323 coding upstream 365238 32736588 ~ 32744258 (+)
XLOC_010056 si:dkey-165n16.1 coding upstream 374731 32729223 ~ 32734765 (+)
XLOC_010062 akirin1 coding downstream 1480 33121106 ~ 33141934 (+)
XLOC_010063 rhbdl2 coding downstream 23108 33142734 ~ 33154518 (+)
XLOC_010064 rragca coding downstream 44232 33163858 ~ 33179119 (+)
XLOC_010065 NA coding downstream 60480 33180106 ~ 33214537 (+)
XLOC_010066 NA coding downstream 130864 33250490 ~ 33293780 (+)
XLOC_010055 CR848729.4 non-coding upstream 436560 32672820 ~ 32672936 (+)
XLOC_010053 CR533571.1 non-coding upstream 600038 32397507 ~ 32509458 (+)
XLOC_010052 NA non-coding upstream 743925 32278999 ~ 32365571 (+)
XLOC_010047 NA non-coding upstream 1013812 32092712 ~ 32095684 (+)
XLOC_010067 AL954832.1 non-coding downstream 223525 33343151 ~ 33343265 (+)
XLOC_010070 BX530064.2 non-coding downstream 632476 33752102 ~ 33756379 (+)
XLOC_010080 NA non-coding downstream 1196136 34315762 ~ 34321379 (+)

Expression


Co-expression Network