CI01000057_02656843_02688559 (PBRM1)


Basic Information

Item Value
gene id CI01000057_02656843_02688559
gene name PBRM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2656843 ~ 2689532 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02656843_02688559.mRNA
ACTAATTCTGTTAGTAAGCTGTTATTAACAAACATTACTGTACTTTAGTACACCAACAATAATCAATTAATTGTATTAAATACTTATTTAATTACTTGTAATACATTCACTGATTTGAGAATAGTGTCCCGATTTCCTGTTGGGCTCTTACAAAACAAGTGAGCATCTTCCCCATATATATTCAGTTATAAATATTAATGTAAATGTTTATAAATAAAATAAGGGATGTCCATCAATCAGTGTTAATATCTTTTTAGAATCTTTCTGGCATTTAGCTTATTTTATTCTATTTATTTTTGGGGGTGACTTATACTAGTTACCACTTTTGTTGTTGTTGTTGTTGTTGTTGCAATATTAATTGAAGTATCTATTTTTTTTTTTTTTTTAAACTATGCCTACAGTTTTTATAAACACAACACTGGTGAATGGATGTTTAGAAATAATTCTGTTAGTAAATGGTACTAACTAGTATTACTGGCAATTCATGACAATAACAATACTTTATAGCTATTTTTAATAAATACATTATTAAATTTGATTTGAAAACATATTTGTGTTGGTTTACTGACCCTTTACTATGATAAGCATAGTTTCCACCAAAAAAATATCAGTTACTACAATTATTGTTACTATTATGAAATATTTCTAAATTAATATTTGGTCTCATTCATTCAGAGTTTTCAGAATCATTTTCGTTTTATTTTATATATATTTTTTATTTTGATAACAGTGTTGGTAGATAGCAAATTGTGACAATTTTATTAGTAATAGTGACTAGGCGTTTGGTGGAATCAGTGGTTTGTAAGAGCATAATACCCTGGTACTAGATTACTAGTATTGCTGTGCAACAGCTTTACTTCAACAGCAATAATAATTTATCAAATAAATTTAAGGAGCACTCAGTTTGATCTAAAATAAGCTTCCATTTTACTGAATATTAACTATTTGACATATCTTTTTTCTAGCATTTACAATGGGCTCAAAGCGACGGAGAGCCACGTCTCCATCCAGCAGTGTGAGCGGAGGAGATTTTGAGGACAGCCAGACCATATCCATACCTTCAACCAGTCGGAAGAGGAGAAGAACCACAAACATCCCCACTGTTGACCCTATTGCTGTGTGTCATGAGTTGTACAACACTATCAGAGACTATAAGGATGATCAGGGCAGGATGCTGTGTGAACTCTTCATCAGAGCACCAAAGAGAAGAAACCAGCCGGATTACTATGATGTGGTGTCCCAGCCCATTGACATGATGAAGATCCAGCAGAAGCTGAAGATGGAGGAGTATGATGATCCTGAAACTCCGGAGTTCAGAGCGGCTTGTAAACTCTGGGATCTGTATATACGCACCAAAAATGAGTTTGTGCAGCGAGGGGATTACGATGAAGATGATGACGATGACGACACACAGGAAAACCCTGGAGGCGTCACAGAGGAGGAGTCCGTCTCAAGCCTTAAGGAAGTTCTTGGGCAGCTTCTGGATGCTGTGCTGACTTACACAGAACATGGGCGTCTCATTAGTGAACTTTTCCAGAGACTTCCCTCTAAAGTGCAATATCCAGATTATTATGCTATTATTAAAGAACCAATAGATCTGAAGACCATTGCACACCGAATACAGATGTGCTACTATAAAAGTGTAAACCATATGGCTAAAGACATTGACTTGTTAGCCAAAAATGCCAAAACCTACAATGAACCGGGATCACAAGTGTTTAAAGTATTTGCACAGAGAAAACTGGAGCTTGAACATGCTGAACCTGTTAAAAGTAGCATCAGGATCAGGAACAGAAGGTTTGCACAAGGAGACAGACTCTCCTCCATCACTACTGCTCTACAGTACGGCTCAGAGAGTGAAGAGGATGCCATACTAACTGGCTCTGTTCATTACGACGAAGGTGAGTCAGAGGCCGAGAGCATCCACTCCAGCATGGACATGTGCAACCCCATCTTCCAGATGTACGAGGCAGTGCGGGGCGGCAGAAACAACCAGGGACAGCTCCTAGCCGAGCCCTTCTTTCAGCTGCCCTCCAGGAAAGACTACCCCGACTACTTCCAGCAAATCAGCCATCCAATCTCCCTCCAGCAGATAAGGAGTAAGATGAAGAACAATGAATATGAAAGTGTGGAACAGATAGATACAGACCTAAACCTGATGTTTGAGAACGCGAAGCGCTACAACGCTCCCAACTCTCAAATCTACAAGCGCGTGCTAAAGTTGCAGCATATACTGCAGATGAAGAGGAAAGAACTGATGAGGAGAGATGATGAAGATGGTGACAGTATGCTCTCATCCACTCTTTCTGATGGCGGCAGCATCAAACGCAAAAGCCATAAGAAGAACACAAAGAAAAACCGCATGAAGGCTCTGTACGCTGCTGTGGCAGAGGCTCGGGAGATGACAGGCCGGAGACTCTGCGACCTCTTCATGGTCAAGCCCTCAAAGAAAGACTACCCAGACTACTACAAGATTATACTGGAACCAATGGACCTGAGGACCATAGACCACAACATCCGCTCCGACAGATACCCCAGTGAGGACTCCATGATGGAGGACATGAAGCTGATGTTCCGCAATGCACGGAAGAGTGGCATCTCTCCTAAAAAGTCCAAGTACCTGACCCCTCTGCAGCAGAAACTCAATGAGCTCTATGAAGCCGTGAAGAACTACACCGACAAGCGCGGACGGCGCCTCAGCACAATCTTCCTCCGTCTTCCATCCCGTGCTGAGCTTCCAGACTACTATGTTGCCATCAAGAAACCCATAGACATGGAGAAGGTCAAGAGCCACATGCTGGCCAACAAGTACCAGGATGTTGATGCTCTGGTGGAAGACTTAGTCTTGATGTTCAACAACGCTTGCACCTACAACGAACCTGAATCGCTGATCTACAAAGATGCATTAGTGCTTCACAAAGTGCTTTTGGAGACTAGGAGAGACTTGGAGGGAGGCGACGACGCGCATGTCCCAGATGTTGCACGGCTCATCCAGGAGCTCATTCGCAATCTTTTCGTCTCAGTGCTAGGCCACCAGGACGACGAGGGGCGTTGCTATAGTGACTCACTGGCGGAGATTCCAGCTGTTGATCCCAACAATTCCGATAAGACTCCATTGAACTTTGAGATCATCAGAGCTAACGTGGATAAGGGCCGTTATAGGAGACTAGATGTGTTCCAGGACCATATGTTTGAAGTTTTGGAGAAAGCCAGACGTCTGCACAGGACGGACTCTGAGATCTTTGAGGACTCTGTGGAGCTCCAGCAGTTCTTCATCCGGATCAGAGATGAGCTGTGCAAGAACGGAGAGATTCTGCTGACGCCCGCCCTCAGTTATACCACTAAACACCTGCACAGCGACGTTGAGAAAGAGAAGAAAGAGAAGCTGCCTAAAGAATATGAAGAAGATAAACTCAAGAGAGAGGAAGAGAAAAAAGAGGCTGAGAAGAGTGAGGACACGGCAGGTGGTGGATGGCAGGGAGTCCTGCAACGCAACTACAGCCAGGACTGCAGCTTCAAGGACAACATGTACCATGTGGGAGACTATGTTTATGTGGAGCCCACAGAACCAAACCTGCAGCCGCACATAGTCTGCATAGAGCGCCTCTGGCAGGATGATGCAGGAGAGAACTGGCTTTATGGCTGCTGGTTCTACAGACCCAACGAAACATTTCATCTTGCTACACGCAAATTTCTTGAGAAAGAAGTTTTCAAAAGCGACTATTACAACAAAATTCCTGTCAGTAAAATAATGGGCAAATGTGTCGTCATGTTTGTGAAGGAGTATTTCAAACTTCAGCCTGACAGCTTCCGACCTGAAGACGTTTTTGTCTGCGAGTCTCGGTATTCTGCTAAAACCAAGTCCTTCAAAAAGATCAAGATGTGGACGATGCCCCTGAGCTCAGTGAAGTTCGTCAGTCGTGAAGTGCCGTTGCCTGTGGTCCGTGTGGCCTCCATGTTTGCACCCAAACAGGACAGTGAAAAGCCTCCTGAGGTGGCAGAGGATAGCAAAGCTGTACCATCTATTATTGATAAGGAGAGGGAGGATGCTACCATGGAGATCAGTAATGGCGAGCCAGGATGCCAGTACTATGAGCAGCTCTGCTACAACGACATGTGGCTGAAAGTGGGAGACTGCGTCTACATCCGCTCTCATGGGCTCGTACGCAACCGTGTGGGCAGGATAGAGAAGATGTGGGTGCGAGATGGAGCTGCCTATTTTTTCGGGCCCATTTTCATCCATCCCGAGGAGACTGAGCATGAGCCTACCAAGATGTTCTACAAGAAGGAAGTGTTCCTCAGTAACCTGGAGGAATCCTGCCCTATGACCTGTATTGGAGGGAAGTGTACAGTGTCTTCTTTCAAAGATTTCCTGTCATGCCGGCCAACTGAAATGCCGGAGGAGGATGTGTTGCTGTGTGAGAGCCGCTACATCGAGAGTGAGAAGCAAATGAAGAAGTTTAAAGGGCTGAAGCGTTTCTCTCTGTCTGCCAAAGTAGTCGAGGATGAAATCTATTACTTTCGAAAGCTCATAGTGCCTCAGAAGGAGCCGTCTCCATTGCTGGATAAGAAGATCGAGGAGTTGGAGGCCAAGTTTGCGGACATGACGGATGAAGAGCTGGAGGATTTGGGTGATGATGATGGAGACGGTTCTGATGCTCACTGCATGCCGCAGCTTCAGACTCAGCTGACCAGCGACATGGACATGCTGCATTATGCACCCCCGCAGAATCCTGTCAATCATATTGAAGTGAGGGATTTTGGCACTTTTGTATGCAATTTGAATCTAAAGTACCGCAAGCAGCCTTATGCATGCTGTCTAATGCTGAGACTAGATAATCAGTATCTCATTTTCCCACAGTCCGCACCAAAGTCGATCAAGGGTCTGTCGAAGAAGGAGGGAGCAAAGAGGAAGATCAACATGAGTGGGTACATTCTCTTCAGCAGTGAAATGAGAGCTGTCATCAAGGCCCAGCACCCTGACTTCTCCTTTGGAGAACTCAGTCGACTGGTGGGCACAGAGTGGAGGAACCTTGAGGCCACTAAGAAAGCTGAGTACGAAGAGCGGGCAGCTAAGGTAGCGGAGCAGCAGGAGCGAGAAAGAGCAACGCAGAACTCCCCAAGAGCAGGTACCCCAGTAGGGGCGCTCATGGGGGTAGTACCTCCCCCGACCCCCATGGGGATGCTTAGCCACAGCATGACGCCTATGGCAGGAAAAGGCATGTTGGGTAGTTACGGGCCACCCATGCTGCCCTTTCATGGGCCTGTCGATGGCATGATTAACATGGCCCGCATGCCTCCACATCCCATGGGGGTGCCTGCCTTACCCCTCCACTTCCCGTGGGGTATGCCTGGCATGCCGTATCTGGATTCTAATGGTTTCAGCAGTGGAGAACTGATTATCTACACAGATAAACATGAACAGAAAGAGCTCAGGGTATCAGTTCACTTTAAAAGTGTCTTATTCTCCATGTATGCGGATACCTCTTTCACAGGTATGAATGGACTGGCCCCAGGTTCAACAGGAAGCACTTACGGGACTCAGATGGGTGTGATGAACTCAGGCCAACAGGCCCCACCACCCTACCCGGGACAGGGGCAGGTTGGGCAGCCCTCTCTACAGCAGCCCTCCACCCCCATATTTGTGGCTCCTCCACCCAAACCCCAGCGACTGCTACATTCAGAGGCCTACCTGAGGTATATAGAAGGACTCAGTGCTGAGTCCACTACTGTCAGCAAATGGGACCAAACACTCTCTGCTCGCAGGAAAGATGTGCGGCTCACCAAAGAGCAGGAAAGCCGTCTGCCCTCGCATTGGCTGAAGAGCAAGGGAGCTCACAAGACCATGGCTGACGCTCTGTGGCGACTACGGGACCTAATGCTGCGAGACACACTAAACATTCAACAGACTGCGGACGGGCTGGTGAATGAGGACGTGAAGCGCACGCTGGATCTGAGCACTCACCTCGCGAAGATAACAGCGGAGATTCAGCTCGCAAATCACGGAGCCTCGAGAGTGCACAGTTTCACCCTCGCGCTGGAGGCCGAGCTCGCGCCGAATCTGGCCTTCATCGGTGCATCTGTAAAAGGGGAGGAAGAGGAAGATGAAAGCTTAGAGCTAAAAGAGAAAACTATCCATGGACAAAGTGGTACATTTTTCGAGGCACAGTTACCATCTTCTCTCGCACCGGGTGCTAAACTGCGGGTGAAGGTTGAGACGGTGTTCAGTCACGTGCTGAAGCCTTTCCCCACCCAGATCACCCAGGCCGAGCGACAGCTGGTGGTCTTCCAGGGGAACCACTACCTGTACTCCCCATATCCCACCCGCTCCCAGACCACCCGTGTCCGCCTGGCCTCCAAAACCGTGGAGAGCTATACCAAACTGGGCAACCCCAGCAAGAGCGACGAGGCCATTGAGTATGGACCATTCAAAGATGTACCTCCCTTCAGCCAG

Function

symbol description
pbrm1 Predicted to enable DNA binding activity and chromatin binding activity. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of RSC-type complex. Is expressed in somite. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human PBRM1 (polybromo 1).

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11757 PBRM1, PB1; protein polybromo-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02656843_02688559.mRNA True 6454 mRNA 0.47 31 2656843 2689532

Neighbor

gene id symbol gene type direction distance location
CI01000057_02624690_02627558 GATA2 coding downstream 26621 2624461 ~ 2630222 (-)
CI01000057_02621058_02622618 NA coding downstream 33994 2620915 ~ 2622849 (-)
CI01000057_02457005_02470094 NA coding downstream 186749 2456813 ~ 2470094 (-)
CI01000057_02439034_02454810 NA coding downstream 202033 2437622 ~ 2454810 (-)
CI01000057_02421510_02433767 NA coding downstream 223076 2421224 ~ 2433767 (-)
CI01000057_02701515_02705729 GLT8D1 coding upstream 11351 2700883 ~ 2705729 (-)
CI01000057_02710209_02720000 NEK4 coding upstream 20632 2710164 ~ 2721575 (-)
CI01000057_02807951_02821617 CCDC3B coding upstream 118234 2807766 ~ 2821793 (-)
CI01000057_02829879_02834139 NA coding upstream 140302 2829834 ~ 2834262 (-)
CI01000057_02838008_02838430 NA coding upstream 147177 2836677 ~ 2838785 (-)
G245024 NA non-coding downstream 60326 2596206 ~ 2596517 (-)
G245016 NA non-coding downstream 79611 2576996 ~ 2577232 (-)
G245015 NA non-coding downstream 79954 2576453 ~ 2576889 (-)
G244982 NA non-coding downstream 242658 2413937 ~ 2414185 (-)
G244944 NA non-coding downstream 260416 2392734 ~ 2396427 (-)
G245069 NA non-coding upstream 161288 2850820 ~ 2869408 (-)
G245130 NA non-coding upstream 213533 2903065 ~ 2903273 (-)
G245996 NA non-coding upstream 301460 2990992 ~ 2991334 (-)
G245966 NA non-coding upstream 323731 3013263 ~ 3322256 (-)
CI01000057_01904867_01921400 NA other downstream 735422 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 851690 1801528 ~ 1806454 (-)
G244358 NA other downstream 2085815 570530 ~ 571028 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 1202203 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 2239212 4927533 ~ 4931420 (-)
G246780 NA other upstream 2521578 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 3234008 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003852 pbrm1 coding NC_007122.7 CM002895.2 3909756 ~ 3959889 (-)
bowfin (Amia calva) AMCG00017171 pbrm1,LOC107699352,LOC107744848 coding CM030122.1 CM030122.1 49384611 ~ 49397912 (+)